Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0875 ATGGAATATAGTTATTCAGCAGAAGCTGCAGATGAAGAAACATACACAACTAGTAGTACATGTTCCATGAGAAAGAAGAAAAACAAGAATACAAAGAGGTTTAGTGATGAACAAATTAAATCATTGGAAACCATGTTTGAGACTGAGACAAGGCTTGAACCAAGAAAGAAGTTGCAATTGGCTAGAGAGCTTGGATTGCAACCAAGACAAGTTGCTATATGGTTTCAAAACAAGAGAGCTAGATGGAAATCAAAGCAACTTGAAAGAGAATACAACAAACTTCAAAATAGTTACAACAATTTGGCTTCAAGGTTTGAATCAATGAAGAAGGAAAGACAAACATTACTAATACAGTTGCAAAAGCTGAATGATCTAATACAAAAGCCAATAGAGCAAAGTCAAAGTTCATCACAAGTTAAAGAAGCAAACAGCATGGAAAGTGAATCAGAAAATGGAGGAACAATCAAATGTGAAGCTGAGGTGAAGCCAAGTCCTTCAATGGAAAGATCAGAACATGTACTTGATGTTCTATCAGATGATGAACCAAGCATAAAAGTTGAATATTTTGGCCTTGAAGATGAACCTGGTCTTATGAATTTTGCTGAGCATGCTGAAGGTTCCTTAACTTCACCAGAAGATTGGAGTGCTTTTGAATCAAATGATCTTTTAGGCCAAACAAGTTGTGATTATCAATGGTGGGACTTTTGGTCTTGA 714 0.3585 MEYSYSAEAADEETYTTSSTCSMRKKKNKNTKRFSDEQIKSLETMFETETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYNKLQNSYNNLASRFESMKKERQTLLIQLQKLNDLIQKPIEQSQSSSQVKEANSMESESENGGTIKCEAEVKPSPSMERSEHVLDVLSDDEPSIKVEYFGLEDEPGLMNFAEHAEGSLTSPEDWSAFESNDLLGQTSCDYQWWDFWS* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0875 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 6 237 IPR045224 GO:0003700
Mal5g0875 237 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 6 237 - -
Mal5g0875 237 SUPERFAMILY Homeodomain-like 15 87 IPR009057 -
Mal5g0875 237 Pfam Homeodomain 32 83 IPR001356 GO:0003677
Mal5g0875 237 CDD homeodomain 34 86 IPR001356 GO:0003677
Mal5g0875 237 Coils Coil 77 125 - -
Mal5g0875 237 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677
Mal5g0875 237 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981|GO:0006355
Mal5g0875 237 MobiDBLite consensus disorder prediction 130 151 - -
Mal5g0875 237 Gene3D - 14 103 - -
Mal5g0875 237 PRINTS Lambda-repressor HTH signature 56 65 IPR000047 GO:0003677
Mal5g0875 237 PRINTS Lambda-repressor HTH signature 65 81 IPR000047 GO:0003677
Mal5g0875 237 SMART HOX_1 25 89 IPR001356 GO:0003677
Mal5g0875 237 MobiDBLite consensus disorder prediction 130 169 - -
Mal5g0875 237 MobiDBLite consensus disorder prediction 10 24 - -
Mal5g0875 237 Pfam Homeobox associated leucine zipper 85 126 IPR003106 GO:0006355|GO:0043565
Mal5g0875 237 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0875 Mal-Chr5 15062470 15063595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0875 5 237 Homeobox Transcription Factor Family AT2G46680 48.413 6.45e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g0875 Homeodomain 4.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0875 K09338 - gmx:100797862 358.992