Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0868 ATGGAAGATTTCATTATCTCACCTTCTTCATCTTCCTCTATGATATCACTTCCTCGTGAAAATCCTTCACCACAAACCCTTCAACAAAAGCTTCAATTTTTACTCCAAACTCAAACCGAAAATTGGGTCTATGCCATTTTATGGCAAACAACAAAAGATGAAAAAGGTAACCCTTTCCTATCTTGGGGTGAAGGCCATTTCGAAGGAACCAAAGAAACAACAACCTCAACAAAACAAAACGACACTAACACGTGTACAAACGGTGATGCTGAATGGTTCTACGTGATGTCGTTGACTCGAAAATTTTCAATAGGTAATTCTTCTTCAATTTCTTTGCCCGGTAAAGCTTTTGCTTTAGATTCTGTTCTTTGGTTGAATAGTAAACATGAACTTCAAATCTATAACTGTGAAAGATCCAATGAAGCACACGTGCATGGAATTGTAACATTGATTTGTATTCCGACAACTAACGGTGTAATCGAAATGGGTTCTTTTGACAATATCCAACAAAATTGGAACCTAGTACACCAAGCTAAATCCATGTTCCAAACATCCTCATCAGAATCAAACTCAAATTTAGGTTTTTTTCCCACCACCAAGCTAGATAAAATTCAAACATTCGACCAAAACATCTCATTACCCGACATCGGTATCATCTCCGGCGTCGGAGAAGAAACCGATGAGACACAAAAAATGAACAAAAAATTGGAACAAAAGCATAACAATATTGTTTCATCATGTTCTGTCGATTCTGAACATTCTGATTCAGAATATTGTCCACCATTAGCAACAACAAAAATACCGAAGAAGAGAGGAAGAAAACCATTAACAGGAACACAAACACCGATGAACCATGTGGAAGCAGAGAGACAAAGGAGAGAGAAATTGAACCATAGATTCTATGCTTTAAGAGCTGTGGTTCCAAACGTTTCAAAGATGGATAAAGCTTCTCTTTTATCAGATGCAGTGGATTACATCAATGAGTTAAAAGCAAAAATTGAAGATTTAGAATCAGAGAAAAAAAAGGAATCAAAAAAAGTGAAGATGGAAACAATGGAAATTGTCGATAATAACAGTGCAACGGCAACTTCAACAGTGGTAGACCAAAAAAGACATTGTAGTAATAATGGTATTGCTTTGGAGATTGAAGTGAAGATTATAGGAAGTGATGCTATGGTAAGAGTTCAATCAGAGAATGTTAATCACCCTGGTGCAAGATTAATGAGTGTATTGAAGGATTTAGAGTTTCAGGTACATCATGCTAGTATATCGACCGTTAATGAAGTTATGGTTCAAGATGTTGTTGTTAAAGTTCCTAATGACATGAAAAATAAAGAGAGTCTAATTAGGTCTGCAATTCTCATGAAATTAGATTATTGA 1380 0.358 MEDFIISPSSSSSMISLPRENPSPQTLQQKLQFLLQTQTENWVYAILWQTTKDEKGNPFLSWGEGHFEGTKETTTSTKQNDTNTCTNGDAEWFYVMSLTRKFSIGNSSSISLPGKAFALDSVLWLNSKHELQIYNCERSNEAHVHGIVTLICIPTTNGVIEMGSFDNIQQNWNLVHQAKSMFQTSSSESNSNLGFFPTTKLDKIQTFDQNISLPDIGIISGVGEETDETQKMNKKLEQKHNNIVSSCSVDSEHSDSEYCPPLATTKIPKKRGRKPLTGTQTPMNHVEAERQRREKLNHRFYALRAVVPNVSKMDKASLLSDAVDYINELKAKIEDLESEKKKESKKVKMETMEIVDNNSATATSTVVDQKRHCSNNGIALEIEVKIIGSDAMVRVQSENVNHPGARLMSVLKDLEFQVHHASISTVNEVMVQDVVVKVPNDMKNKESLIRSAILMKLDY* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0868 459 SMART finulus 286 335 IPR011598 GO:0046983
Mal5g0868 459 Coils Coil 319 353 - -
Mal5g0868 459 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 343 IPR036638 GO:0046983
Mal5g0868 459 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 27 182 IPR025610 -
Mal5g0868 459 PANTHER TRANSCRIPTION FACTOR BHLH14 1 457 - -
Mal5g0868 459 PANTHER MYC 1 457 IPR045084 GO:0003700|GO:0006355
Mal5g0868 459 Pfam Helix-loop-helix DNA-binding domain 284 329 IPR011598 GO:0046983
Mal5g0868 459 MobiDBLite consensus disorder prediction 1 23 - -
Mal5g0868 459 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Mal5g0868 459 MobiDBLite consensus disorder prediction 254 281 - -
Mal5g0868 459 Gene3D - 277 346 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0868 Mal-Chr5 14843758 14845137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0868 1 448 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 32.914 7.40e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g0868 bHLH-MYC_N 7.1e-41 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0868 - K13422 gmx:100804965 489.189