Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0856 ATGATTTCCTTTCTGTTAAGGGTACTAATGTTGTGGAATCTTAGGATGAGTTTACAACCTCATATGGTGAGTGGTAACAATCAAGACCAATATAATGACACAAAGTTTACCAAAATATTTGTTGGAGGTTTAGCTTGGGAAACACAAAGGGAAACAATGAGAATGTATTTTGAGCAATTTGGAGAGATCTTAGAAGCTGTTGTGATCACAGATAAGTATACTGGGAGATCCAAAGGTTATGGTTTTGTGACATTTAAGGATCCAGAAGCAGCTATAAGAGCATGTCAAAATCCATCTCCAGTTATTGATGGAAGAAGAGCAAATTGCAATATTGCTTCTCTTGGTGCTAACAAGAATAGATCACTAACTCTTCAGCATGGAAGGTTTAGGCCTCCACATGGAGTGGTAGCATCAGTTCCTTATCATGGTTCTTCATCTACAATTTTTCATCAACCCACTAGACAATACACATTTCCTTATTCAGCATATGGATATTCTGGATATTCACAAGACACATTGTATCCTGCGAACTATTACAATGTCTATGGAATTCAACAATATTCACCTTACTACCCATCATCTGTTGGAGCTGCTGGAGCAATGGGATTGGTCCAAAATATGTACCCTTTCTATGGTCAATATGCACAAAATGTCCATGGTCATGGTTTTGGAGTTCAATACCCCCAAATGACACAAATTCCAGTTTTGCCTCAGCATTATGGTTCACAAGGAATATTGTCATTGCCTTCTTCAGTAGCAATGCCAAACACTACTCCAGCAACAGTAACTGCAACCACAACTATTACAATAGCAGTACCTGTGGCAGTAACAAGGGTTGGTAGTTCACAAGCTTCTGGAACAGATTCTGAACAACAACAGTCTACATCTTGA 891 0.3861 MISFLLRVLMLWNLRMSLQPHMVSGNNQDQYNDTKFTKIFVGGLAWETQRETMRMYFEQFGEILEAVVITDKYTGRSKGYGFVTFKDPEAAIRACQNPSPVIDGRRANCNIASLGANKNRSLTLQHGRFRPPHGVVASVPYHGSSSTIFHQPTRQYTFPYSAYGYSGYSQDTLYPANYYNVYGIQQYSPYYPSSVGAAGAMGLVQNMYPFYGQYAQNVHGHGFGVQYPQMTQIPVLPQHYGSQGILSLPSSVAMPNTTPATVTATTTITIAVPVAVTRVGSSQASGTDSEQQQSTS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0856 296 CDD RRM_RBM24_RBM38_like 37 112 - -
Mal5g0856 296 SMART rrm1_1 38 110 IPR000504 GO:0003723
Mal5g0856 296 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 129 IPR000504 GO:0003723
Mal5g0856 296 Gene3D - 15 126 IPR012677 -
Mal5g0856 296 SUPERFAMILY RNA-binding domain, RBD 15 128 IPR035979 GO:0003676
Mal5g0856 296 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 96 IPR000504 GO:0003723
Mal5g0856 296 PANTHER BOULE-RELATED 19 274 IPR037366 GO:0003729
Mal5g0856 296 PANTHER - 19 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0856 Mal-Chr5 14549124 14551523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0856 39 113 C2H2 Transcription Factor Family AT2G19380 46.667 1.59e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0856 - - gmx:100786208 406.371