Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0853 ATGCCTGATAACATGAGTATATCTGTTAATGGACAATCTCAAGTTCCTCCTGGATTCAGGTTTCATCCAACTGAAGAAGAGCTTCTTCAATACTACTTGAGGAAAAAAGTCTCTTATGAGAAGATTGATCTTGATGTTATTCGTGATGTTGATCTCAACAAGCTTGAACCATGGGACATACAAGAGAAATGCAAAATAGGAACAACTCCGCAAAATGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACCGGAACACGAACCAACCGCGCTACAGCCGCTGGGTTCTGGAAAGCCACCGGACGTGACAAAGTTATATATAGCAATGGAAAAAGGATTGGAATGAGAAAGACTCTTGTTTTCTACAAAGGTCGTGCCCCTCATGGCCAAAAATCTGATTGGATCATGCATGAGTATAGACTCGACGATAATACCACCAATGACACCAATCTGGTGTCGAATGTGATTGGTGATGGTGGTCAAGAAGAAGGATGGGTGGTGTGTAGGATATTCAAGAAGAAGAATCATCTCAAAACCCTAGACAGCCCTTCTGGAGAGGGAAGAAGAAGCCACCACTTGTATGATACTTGTGATGAAGGAGCTTTGGAGCAAATACTTCAACAAATGGGAAGGGGTTGCAAGGAAGAGAATTATGAAGCAAATTACAATAATAATTATGGAAGGTTTGCTAGGCCTTTTGAATCTAGTCTCAACAACAATGGTGGTTATAATAATGAAAGGTTCATGAAACTTCCAAGCTTAGAGAGTCCAAAATCAACAAGCCTGGAGAACAATGACAACAACAATGATGGGTACCATGCAATTATTCAAGTTGATATGGCTAATGAAAATGAAGGGTCATTCACTAATCATCATCATAACAACATGGTTAATAATCCATTAGAGGCATCATCTTCATCATCAATGGTGATAGCATCATGTGGTGGTGGTGATGGTGGTCTTACTAATTGGGTAGCTTTGGATAGGCTTGTTGCTTCTCAATTGAATGGACAAACTGAGGCTTCTAGGCAATTGGCTTGCTTTAATGACCCCACAATGGGATATTGCACTAATGATCATGATTTTCAACTTCCCACCCTTAGATCATCATCATCAACTTCATCAATATCAACTCATGCAAAAGCTATTACTTCTACTACTGCTGCTACTACCGCTACTACTTACATTAGTCCCTCACATGACTATGCGAGTGAGATTGATCTCTGGAACTTTGCTCGATCAACTTCCTCCTTGTTGTCATCTTCAGAACCACTGTGCCACGTGTCAAATACGTCAGTGTGA 1308 0.406 MPDNMSISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSYEKIDLDVIRDVDLNKLEPWDIQEKCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNTTNDTNLVSNVIGDGGQEEGWVVCRIFKKKNHLKTLDSPSGEGRRSHHLYDTCDEGALEQILQQMGRGCKEENYEANYNNNYGRFARPFESSLNNNGGYNNERFMKLPSLESPKSTSLENNDNNNDGYHAIIQVDMANENEGSFTNHHHNNMVNNPLEASSSSSMVIASCGGGDGGLTNWVALDRLVASQLNGQTEASRQLACFNDPTMGYCTNDHDFQLPTLRSSSSTSSISTHAKAITSTTAATTATTYISPSHDYASEIDLWNFARSTSSLLSSSEPLCHVSNTSV* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0853 435 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Mal5g0853 435 Gene3D NAC domain 24 180 IPR036093 GO:0003677|GO:0006355
Mal5g0853 435 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 9 382 - -
Mal5g0853 435 SUPERFAMILY NAC domain 9 175 IPR036093 GO:0003677|GO:0006355
Mal5g0853 435 ProSiteProfiles NAC domain profile. 15 175 IPR003441 GO:0003677|GO:0006355
Mal5g0853 435 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 9 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0853 Mal-Chr5 14352127 14353771 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0853 1 434 NAC Transcription Factor Family AT2G46770 52.125 1.10e-136 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Mal5g0853 NAM 4.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0853 - - gmx:100793308 615.535