Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0805 ATGGCAACCAAAGAAGATCACGAAATCATCTTCGAAAGTGAAGGATCCGATCCATATTCAGAATGCGAAGATTCAGAAGAAGATCCTGATTTCGACATGCTTGAAGAAACCCATCGTAGCTTCTCCAATCTCTCACTCAAGAGCAAGGCGAAAAAGCGCATAGTTGATGATAAGGGTCTCGCTAGTACTGAGATGAATGCAGAAGTGTTGGAGATGAATGCACCTTCTGTTGATGATGATGGTTTTGAAAAAGTTCAGAAAATAATCAAGGCTGGACTCCTAGAGAAATTGAAAGTGGATGAATGCAAGATGTATTTGAAGAAGAATGGTCTGAGGCTAACTGGGAATAAGGACACACTTATCCAGCGTATAAAGGAGCATCAAGAGATTATAAATGGAGGGGAGGAAAAGTACCCGCCTCATAGCTTTGTGTTGAACTGTAAAGGTGATGCATGCACCGGTGATGTTGTTTTGTTTGAGCAAAATGTTTATGAAATGTTCAACATAGCATCCAGGAGTGGCGGCGGTCCACCGTGTGGCAAAAGGATTGTTGCAGGCCGCATAGTGAAAGAAAGCTATGGTGCTGCCAAACAACAGCATACATTTACCATTGAAGTGCTGTGGAGCAAGGGAGAAAAGCCTCTTCCTCCCCTTCATCCCTTACTGATTAAGGGTCGAAACCTATATCGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGAAAAGACAAAAACTGTTAATGGAAAAACACTACCGGGGATCCGTTGCTAGGGCAGATAGGGAAGCAAGGATACAGGAAAAGGAGATGAGAAAATCAATGAAGGAAAATAGGATCTCCAAAAAGGATTCAGCAAAGAGCCAATTCCAATCACATTCATCCATTGCTAGGTCACAAAATCAACCTCAAGAAACAACAAAAGTATTCATTAATCCAAAAAACCCCAAATTTCCACCTCAACACTCAGCTATATCAACACCGGCAATTGTAAATAAACCAGCAGCTGTAACTGAACAGCGCGTTCAGTCTATTGATTCTCGAACTGTTGTAATGGGATCAGACCAGCTCAGAAATTCAGGAAAATCATCTTTTAGTGCAAACAACTATTTTGCTGACTACAGAGACAACCCAACTGGTACCGAGAGATACAATGCTTTCATTGCTGAGACAAACAGGAGAGCTTGTTATCAAAGGAAGCCTTTGACAAGTGCAAATCACTTTGTTCCGCGTTCGGCAAATGCAAACCACTTTGTTCCGCGTTCAGAAAATGCAAATCACATGCATACATCGATGTCAAACAGAGAAAGCTATCAGCATAAACAGTTTTGTAGACATTTTGCCCGTGGAAGGTGCCATTTTGGAGATAACTGCAAATTCTTACATGGTTCGAGAGACTAA 1401 0.4176 MATKEDHEIIFESEGSDPYSECEDSEEDPDFDMLEETHRSFSNLSLKSKAKKRIVDDKGLASTEMNAEVLEMNAPSVDDDGFEKVQKIIKAGLLEKLKVDECKMYLKKNGLRLTGNKDTLIQRIKEHQEIINGGEEKYPPHSFVLNCKGDACTGDVVLFEQNVYEMFNIASRSGGGPPCGKRIVAGRIVKESYGAAKQQHTFTIEVLWSKGEKPLPPLHPLLIKGRNLYRLKTLRQKWEDEGKRQKLLMEKHYRGSVARADREARIQEKEMRKSMKENRISKKDSAKSQFQSHSSIARSQNQPQETTKVFINPKNPKFPPQHSAISTPAIVNKPAAVTEQRVQSIDSRTVVMGSDQLRNSGKSSFSANNYFADYRDNPTGTERYNAFIAETNRRACYQRKPLTSANHFVPRSANANHFVPRSENANHMHTSMSNRESYQHKQFCRHFARGRCHFGDNCKFLHGSRD* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0805 466 Gene3D - 426 466 - -
Mal5g0805 466 SUPERFAMILY CCCH zinc finger 439 463 IPR036855 GO:0046872
Mal5g0805 466 MobiDBLite consensus disorder prediction 270 286 - -
Mal5g0805 466 Pfam SAP domain 94 127 IPR003034 -
Mal5g0805 466 ProSiteProfiles Zinc finger C3H1-type profile. 438 465 IPR000571 GO:0046872
Mal5g0805 466 Gene3D SAP domain 84 140 IPR036361 -
Mal5g0805 466 SUPERFAMILY SAP domain 84 128 IPR036361 -
Mal5g0805 466 SMART sap_9 94 128 IPR003034 -
Mal5g0805 466 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 5 465 - -
Mal5g0805 466 ProSiteProfiles SAP motif profile. 94 128 IPR003034 -
Mal5g0805 466 MobiDBLite consensus disorder prediction 270 305 - -
Mal5g0805 466 Pfam CCCH-type zinc finger 444 463 IPR041367 -
Mal5g0805 466 Coils Coil 257 277 - -
Mal5g0805 466 MobiDBLite consensus disorder prediction 287 305 - -
Mal5g0805 466 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 5 465 IPR045124 GO:0003723|GO:0045892
Mal5g0805 466 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0805 Mal-Chr5 13235610 13239459 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal5g0805 SAP 6.1e-09 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0805 - - gmx:100815642 544.273