Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0786 ATGATGCAACAAGCTGCTCTTCTTCAACAACAGTCTCTCTATCACCCTGGTCTCCTTGCTCCACCTCAGATTGAACCAATCCCAAGTGGAAATTTGCCTCCTGGTTTTGATCCAAGTACTTGCCGCAGTGTGTATGTAGGCAATGTCCATACACAGGTAACCGAGCCACTTCTGCAAGAAGTTTTTGCGGGTACTGGCCCAGTCGAAGGGTGTAAGCTTTTTAGAAAAGAGAAGTCATCCTATGGATTCATTCATTACTTCGATCGCAGATCTGCTGCTCTGGCCATATTAACTCTCAATGGAAGGCATCTATTTGGGCAACCTATCAAAGTTAACTGGGCATATGCTAGTGGTCAGAGAGAGGATACATCAGGCCATTACAACATATTTGTTGGTGACCTCAGTCCTGAGGTTACTGATGCTACACTTTTCGCATGCTTTTCTGTCTACCAAAGTTGTTCAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGGATTTGTTTCATTCCGTACTCAACAGGATGCTCAAAGTGCTATTAATGATTTGACTGGTAAGTGGCTTGGAAGTAGACAAATACGCTGCAATTGGGCAACGAAAGGTGCTGGTGGCATGGAGGAGAAGCAAAGCTCAGACAGCAAAAGTGTGGTGGAACTAACAAATGGTTCATCTGAGGATGGTAAAGAGATATCTAGCAATGATGCTCCTGACAACAATCCTCAATATACAACTGTTTACGTGGGTAACCTTGGTTCGGAGGCAACACAGCTTGATCTCCATCGCCACTTCCATGCCCTTGGGGCTGGTGTGATAGAGGAGGTTCGTGTCCAGCGTGATAAAGGATTTGGGTTTGTGAGATATAGTACTCACGCTGAAGCAGCTCTGGCAATTCAAATGGGAAATGCCCAGTCTTATCTCTGTGGCAAAATAATTAAGTGCTCCTGGGGAAGCAAGCCCACTCCACCTGGAACTGCTTCAAATCCTCTTCCTCCACCTGCTGCTGCACCTCTGCCAGGTCTGTCCGCAACCGATATTTTGGCATACGAGCGGCAGCTAGCAATGAGCAAGATGGGTGGTGTTCATGCTGCCTTGATGCATCCTCAAGCACAGCATCCTCTTAAGCAGGCTGCAATTGGAGCAAGCCAGGCGATATACGATGGCGGGTTCCAAAATGTTGCTGCTGCACAGCAAATGATGTACTATCAGTAA 1224 0.469 MMQQAALLQQQSLYHPGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNVHTQVTEPLLQEVFAGTGPVEGCKLFRKEKSSYGFIHYFDRRSAALAILTLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVGDLSPEVTDATLFACFSVYQSCSDARVMWDQKTGRSRGFGFVSFRTQQDAQSAINDLTGKWLGSRQIRCNWATKGAGGMEEKQSSDSKSVVELTNGSSEDGKEISSNDAPDNNPQYTTVYVGNLGSEATQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNAQSYLCGKIIKCSWGSKPTPPGTASNPLPPPAAAPLPGLSATDILAYERQLAMSKMGGVHAALMHPQAQHPLKQAAIGASQAIYDGGFQNVAAAQQMMYYQ* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0786 407 Gene3D - 124 219 IPR012677 -
Mal5g0786 407 Gene3D - 2 123 IPR012677 -
Mal5g0786 407 SMART rrm1_1 128 201 IPR000504 GO:0003723
Mal5g0786 407 SMART rrm1_1 43 112 IPR000504 GO:0003723
Mal5g0786 407 SMART rrm1_1 249 319 IPR000504 GO:0003723
Mal5g0786 407 SUPERFAMILY RNA-binding domain, RBD 26 120 IPR035979 GO:0003676
Mal5g0786 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 323 IPR000504 GO:0003723
Mal5g0786 407 MobiDBLite consensus disorder prediction 206 247 - -
Mal5g0786 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 116 IPR000504 GO:0003723
Mal5g0786 407 SUPERFAMILY RNA-binding domain, RBD 237 330 IPR035979 GO:0003676
Mal5g0786 407 CDD RRM3_TIA1_like 248 323 - -
Mal5g0786 407 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 2 388 - -
Mal5g0786 407 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 388 - -
Mal5g0786 407 CDD RRM1_TIA1_like 44 114 - -
Mal5g0786 407 MobiDBLite consensus disorder prediction 211 247 - -
Mal5g0786 407 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Mal5g0786 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 307 IPR000504 GO:0003723
Mal5g0786 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Mal5g0786 407 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 199 IPR000504 GO:0003723
Mal5g0786 407 Gene3D - 225 327 IPR012677 -
Mal5g0786 407 SUPERFAMILY RNA-binding domain, RBD 121 217 IPR035979 GO:0003676
Mal5g0786 407 CDD RRM2_PUB1 128 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0786 Mal-Chr5 12976414 12981679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0786 37 324 Eukaryotic Initiation Factors Gene Family AT4G34110 28.383 9.44e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0786 K13201 - gmx:100781227 748.814
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0786 5 12976414 12981679 Mal5g0786 5 12976414 12981679 ECH