Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0747 ATGTCCTCACAAGAGCAAGCACTAGTCTCTCTCCTCTCCCAACTAGCGCTATCCTTCGACGGCGCCGTTTTAGGTTTCGCCGTCGCTTACGTCGCCGTTCGCTCCATCCGCAAATTCACCTTCACCTCCGCCGCTCTCCGTAAAATCACCCGCGCTCCTTCCGTCTCCGTCTCCGACCTCCGCTCGCTCCTCGATGAAAACTCCGATGATGGCAAATTCGTAATTGTTCGTGGTACTGTTGATGCTAAGAACGCTGTTGATGGTAGTTGGAAAGCGTTGTGGCCTGGTGTCTTGGTTTCGAGTGAGTCTGGTGATAAAGGTGTTGTTCTTCAACGAACTCAAACGTGTATATACAATGAATGGAAGGGCTTATTTGGATGGACTTCTGATCTTCGAGCCATATTTACAAGATCTTGGAGACAACAAGAGTCCACATGCTTAAGAAAGATCCCTTTTGTTCTCATTGATGTTGGACGGCAGTCAAATCCCGAATATGTTGTTGTCAACACGGATGGATCAAGTCATCCTTTACCTCTTACAACAGTTTACCATAAATTGCAACCTATAAATCCTCCTCATTATAGTTTCTTGCAAGCACTTTTTGGGCATGAATATCCAGTTGGACTGCTTGATGAAGAGAAAATTCTTCCCTTGGGAAAGGATATCAGTGCTGTAGGCCTTTGCACTTTAAGAAATGGAATTGCTGAAATCAAGTCTTGCAATGATCTTCCATATTTTCTGTCTGAGTTGAGTAAAGATCAGATGATTGTAGATCTTTCCTTCAAAACTAAAGTACTGTTTTGGAGTGGTATTCTTCTTGGTTCAATGTCAGTTGGGATCATCGGCTATGCAGCTGTGAGGAACTGGAATAAATGGAAACAATGGAAGCAACAAAGGCAGCTCCAGCGACGAAGGCAACCACCCATTGAACCTGTTCTTCCGCCAGAGGATGAGATTGAAGATGTTCCAGATGGACAATTATGTGTTATATGTCTGATGAGGAGAAGGCGCTCTGTTTTTATTCCATGTGGGCATCTAGTATGTTGCCAAGGGTGTGCCATATCAGTTGAAAGTGAAGTGGCACCCAAGTGTCCAGTTTGTCGTCAGGAGGTTCGGGATTCAGTGCGAATTTTTGAATCTTGA 1143 0.4471 MSSQEQALVSLLSQLALSFDGAVLGFAVAYVAVRSIRKFTFTSAALRKITRAPSVSVSDLRSLLDENSDDGKFVIVRGTVDAKNAVDGSWKALWPGVLVSSESGDKGVVLQRTQTCIYNEWKGLFGWTSDLRAIFTRSWRQQESTCLRKIPFVLIDVGRQSNPEYVVVNTDGSSHPLPLTTVYHKLQPINPPHYSFLQALFGHEYPVGLLDEEKILPLGKDISAVGLCTLRNGIAEIKSCNDLPYFLSELSKDQMIVDLSFKTKVLFWSGILLGSMSVGIIGYAAVRNWNKWKQWKQQRQLQRRRQPPIEPVLPPEDEIEDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAISVESEVAPKCPVCRQEVRDSVRIFES* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0747 380 SUPERFAMILY RING/U-box 322 373 - -
Mal5g0747 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 380 IPR044247 GO:0004842
Mal5g0747 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 380 IPR013083 -
Mal5g0747 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 380 - -
Mal5g0747 380 Pfam E3 Ubiquitin ligase 133 279 IPR022170 GO:0004842|GO:0006996|GO:0016567
Mal5g0747 380 Pfam Zinc finger, C3HC4 type (RING finger) 326 373 - -
Mal5g0747 380 SMART ring_2 328 367 IPR001841 -
Mal5g0747 380 ProSiteProfiles Zinc finger RING-type profile. 328 368 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0747 325 377 C3H Transcription Factor Family AT3G06140 35.849 5.12e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0747 K15688 - gmx:100800058 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0747 5 12382908 12390313 Mal5g0747 5 12382908 12390313 ECH