Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0719 ATGGGTAGAAGTCCTAAGGAGATTAATAAAGGTGCTTGGTCTCGTGAAGAAGATGACATCCTCTCCAAATATGTTGTCATTCATGGAGAAGGAAAATGGCAAAAGGTTGCCCAAAATGCAGGTTTAAAGCGGTGTGGAAAAAGTTGCAGACAAAGATGGTTGAATTATCTAAAACCAGGTATAAAGAGAGGCGACATCTCTACCGATGAAGAGGATATGATCATAAGACTTCATCGTCTTCTTGGTAACAGATGGTCATTGATAGCTAAGAGGCTACCAGGACGAACTGACAATGAAATCAAGAACTACTGGAATACTAATCTGTCAAAGAAGTTACAAAAACAACCTACATCATCATCATTGCCATCATTATCTTCTGCTTCACTTCAACACAATCATCACAAATGTGAACATGTAGCACCAGAAGCTCCAAGGGCTAGGAGATTGAAGGTTGTTCATCAATGTAACAAAATTTTGGAGAAGAATAATGGAAGTGAGTGTGATCAAGGAAGTGATGAAACTTCTATTGCTGATTTTCTCATTGACTTTGATCATCAAGATCAGTTGATGATTGGTGATGATGAGTTTAATTCAAAGATTCCACAAATGGAAGATCATAAGGTGAGTTCAACAAATAGTACTCATAGTTCATCATCACCTTCTGATCATTGCCATCTTTTAGCAGAGAAATTTGATCCTCTAGATACCCTTTTGGATGTGGAGCTTAAGAAGATGGCTTCCTTTCTTGGACTTGAAAATGATTGA 765 0.3778 MGRSPKEINKGAWSREEDDILSKYVVIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISTDEEDMIIRLHRLLGNRWSLIAKRLPGRTDNEIKNYWNTNLSKKLQKQPTSSSLPSLSSASLQHNHHKCEHVAPEAPRARRLKVVHQCNKILEKNNGSECDQGSDETSIADFLIDFDHQDQLMIGDDEFNSKIPQMEDHKVSSTNSTHSSSSPSDHCHLLAEKFDPLDTLLDVELKKMASFLGLEND* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0719 254 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Mal5g0719 254 Pfam Myb-like DNA-binding domain 64 108 IPR001005 -
Mal5g0719 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Mal5g0719 254 MobiDBLite consensus disorder prediction 204 224 - -
Mal5g0719 254 CDD SANT 12 57 IPR001005 -
Mal5g0719 254 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 61 IPR017930 -
Mal5g0719 254 Gene3D - 66 139 - -
Mal5g0719 254 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 242 - -
Mal5g0719 254 SUPERFAMILY Homeodomain-like 8 104 IPR009057 -
Mal5g0719 254 CDD SANT 67 108 IPR001005 -
Mal5g0719 254 PANTHER MYB TRANSCRIPTION FACTOR 1 242 - -
Mal5g0719 254 MobiDBLite consensus disorder prediction 204 223 - -
Mal5g0719 254 Gene3D - 3 63 - -
Mal5g0719 254 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Mal5g0719 254 SMART sant 9 59 IPR001005 -
Mal5g0719 254 SMART sant 62 110 IPR001005 -
Mal5g0719 254 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0719 Mal-Chr5 11975766 11976987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0719 6 139 MYB Transcription Factor Family AT3G27920 53.793 2.13e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g0719 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0719 K09422 - gmx:547568 319.701
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0719 5 11975766 11976987 Mal5g0719 5 11975766 11976987 ECH