LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0694	ATGTGTTTTATTGTTTGTCTATTTCTTGTTTCTCTATTAGGTGAAGCAGCAACAAACACAGCAATAGCATCATCATCATCAGACAACAAAGATCCTCAGATTAAGTACGATGTTTTTGTTAACTTTCGAGGTTCAGACATACGTCAAGATTTTCTTAGCCATTTAATTGAAGCATTCAAAAGAAAGCAAATTTTTGCCTTCGTTGATACTAGGGTTGAAAAAGGAGATAAAATATCACTATCACTTGCTTTAGCAATTGAAACATCGTTGATTTCTTTGGTCATATTCACTCAAAACTATGCTTCTTCATCATGGTGTTTGGATGAACTTGTCAAAATTGTTCAATGCAGAAAAAAAGATGGACAAATTTTATTGCCTGTTTTCTACAAAGTGGACCCCACAAGTGTGAGGCATCAGAAGGGAACTTATGCAAAGGAATTTGATAAACATAAGAAAAAGTATGATTTGAGTAGGGTGAAAGAGTGGAGATCTGCTTTGAAGGAATCTGGTAATATCTTGGGATTTCACTCACCACATTTTCCGAATGACGCTGTACTTGTTGAAGAAATAGTTAAATGTGTGTTGACGAGGTTGGATCATGTGGAACAAGCTAACTCAAAAGGACTTGTTGGAATTGGCACAAAAGTTTCACATGTGGAATCATTGTTACAGACAGGTTCAAATGATGTTCGCGCCATTGGAATTTGGGGCATGGCTGGGATTGGTAAAACAACTATTGCAGAACAAGTCTATGGCAGACTATGTTCTGTATATGAAGGTTGTTACTTCAAGGCTAATGTAAGAGAAGAATCCAAAAGACATGGAAATATGTATTTAAAGAAAGAGCTTTATTCTACTCTATTAAGGCAACAAGATTTGAATATTGACACACCTCGTGGATTGCCATCTTTTGTTCAGAGGAGGCTTCGTCGTATGAAGGTTCTTGTTGTTCTTGACGATGTCAATGATCAAGAGCAACTGGAAATTTTAATTGGAACACTCATTTGGTTTGGAAATGGTAGTAGAATCATCATAACTACTAGAGATAAACAAGTACTAGCTAAAAGGGTGGTTGATAATGATATATATGAGGTTAAAAAATTAGACTTCAATGACTCTTTTCGGCTTTTCAATTTGAATGCGTTTGAACAAAACCATCATCTTGAAGTAGAGTATGTTGAGCTGTCCACGAAGATGGTTGATTATGCCGATGGCAATCCACTAGTTCTTGAAGTTTTGGGTCGTCATCTTCATGGAAAAAACAAAAAGATATGGGAAAGCCAGTTCCAGATGCTTACAAAAGTGCCAATTAAAAGGGTCAACGATGTTGTTAAATTGAGCTACAATGATCTTGATCGTCACGAGAAGAGGATACTTTTAGACATTGCATGTTTTTTAGATGGATTGCATCTCAAAGTCGACCTAATAAAATTGTTGGTGAAAGATCATGGTTATTCAGTAGATGTTGAGTTAGAAAGCTTGAAAAATAAAGCTCTTATAACTATTTCTCAAGATAATGTCATATCCATGCATAGCATTATACAAGAAACGGCTTGGGAAATTGTTCGTGAAGAATCCATCGACGACCCTGAAAAGAGAAGTCGTCTACTAGATCCTAATGATATTTATCAAGTACTGAAAAGTAACAAGGGTACTAAGGCTATTAGAAGCTTAGCTATCGACTTGTCAATAATTAAAGGTGTGCGGCTAAATCCAAAGGTGTTTTCTAAAATGAGCAAACTACAATATCTGGATATTTATAGTAAGGGGTACTCATGTGATTTTTTCCAGAGTCGAAAGGGCTTATATCTTCCTCAAGGGCTTGAATCTTTGCCAAATGAACTCAGATACCTTCGTTGGACACATTTCCCTTGGGAGTCCTTACCGTCCAAATTTTCTGGGGAAAAACTGATCGTATTGGACTTGCAGAACAGCCGGGTGAGAGAACTTTGGTATGAAGATGACAAGGATCTTATGAATTTAAAATATCTTAAACTTGGTTCATCGTCACACCTGGTGGAACTTCCAGACTTGTCGAATGCTACAAATCTTGAAGTAATTGATCTTCGTTTGTGTGAAAGGTTGAGTAGTTTACATCCATCTGTCTTTACTCTCAATAAGCTCAAGAAATTGGACCTAGGTGGATGCATTTCCCTCAAAAGCTTTCGAAGCAATAACCATTTAAGCTCCCTTCGTTATCTCTACCTCGGTGGTTGCACTGCACTGAAGGATTTCTCAGTAACCTCAAAGGAAATGGTAAAGTTGAATTTAGAACTCACAAGTATCAAAAAACTACCATCATCAATTGGACTTCAGAACAAACTTGAAAAATTGCTTCTTGCACACAGTTACATTGAGAACTTACCTGAAAGCATCAAGCTTCTTACAAGGCTGACACATCTTGGCTTACAAGATTGTACGAGGCTTCGAAGTCTACCAGCGCTCCCTTCATCATTGATAACTCTAGATGCCAGTGGCTGTGTATCATTGGAGAATGTAGCTTTCCCTTCAACTGCTCTTCAAATGTTAACGGAAAAAAAGACAAGGGTTGCCTTCTGGAATTGCCTGAAACTGGATCAACATTCTCTCAAGGCAATAGGATTGAATGCACAAATTAACATGAAGAAATTTGCGCATCATAATATATCCCATGATCACGATGATGATGCTCAAGGCACGTACGTGTACCCGGGAAGTAGTGTTCCAGAATGGTTTGTGTATAGGACAACGCGTGATTACATGACTATTGATCTCTCTTTTGCTAACTATTCCTCTCAATTGAGCTTCGTCTTTTGCTTCATTATTCCACAAGTTCCATCATATGGTTCCATTTTAAGATTTGATTTTGAAGTTGATGAAGGTGAAGATATCCAATTGAACTTGGATAGGCCAAGTCAAGAAATTAAATCAGATCATGTGTATTTAACATACAACCAAGGGCTTTCTCGCTGTCTCAATAGCAGAGTCAAAGAACAGCCAAAGTTCAAAATTAAGGTTACAGCAGAATCTAGCAGCCTAACTTCGGATTACGTTTCTTCAATGATATTGAGAGGGTTTGGGATCTGTCCAATAAACACCTAA	3081	0.3739	MCFIVCLFLVSLLGEAATNTAIASSSSDNKDPQIKYDVFVNFRGSDIRQDFLSHLIEAFKRKQIFAFVDTRVEKGDKISLSLALAIETSLISLVIFTQNYASSSWCLDELVKIVQCRKKDGQILLPVFYKVDPTSVRHQKGTYAKEFDKHKKKYDLSRVKEWRSALKESGNILGFHSPHFPNDAVLVEEIVKCVLTRLDHVEQANSKGLVGIGTKVSHVESLLQTGSNDVRAIGIWGMAGIGKTTIAEQVYGRLCSVYEGCYFKANVREESKRHGNMYLKKELYSTLLRQQDLNIDTPRGLPSFVQRRLRRMKVLVVLDDVNDQEQLEILIGTLIWFGNGSRIIITTRDKQVLAKRVVDNDIYEVKKLDFNDSFRLFNLNAFEQNHHLEVEYVELSTKMVDYADGNPLVLEVLGRHLHGKNKKIWESQFQMLTKVPIKRVNDVVKLSYNDLDRHEKRILLDIACFLDGLHLKVDLIKLLVKDHGYSVDVELESLKNKALITISQDNVISMHSIIQETAWEIVREESIDDPEKRSRLLDPNDIYQVLKSNKGTKAIRSLAIDLSIIKGVRLNPKVFSKMSKLQYLDIYSKGYSCDFFQSRKGLYLPQGLESLPNELRYLRWTHFPWESLPSKFSGEKLIVLDLQNSRVRELWYEDDKDLMNLKYLKLGSSSHLVELPDLSNATNLEVIDLRLCERLSSLHPSVFTLNKLKKLDLGGCISLKSFRSNNHLSSLRYLYLGGCTALKDFSVTSKEMVKLNLELTSIKKLPSSIGLQNKLEKLLLAHSYIENLPESIKLLTRLTHLGLQDCTRLRSLPALPSSLITLDASGCVSLENVAFPSTALQMLTEKKTRVAFWNCLKLDQHSLKAIGLNAQINMKKFAHHNISHDHDDDAQGTYVYPGSSVPEWFVYRTTRDYMTIDLSFANYSSQLSFVFCFIIPQVPSYGSILRFDFEVDEGEDIQLNLDRPSQEIKSDHVYLTYNQGLSRCLNSRVKEQPKFKIKVTAESSSLTSDYVSSMILRGFGICPINT*	1027

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g0694	1026	Gene3D	Ribonuclease Inhibitor	750	886	IPR032675	-
	Mal5g0694	1026	Pfam	NB-ARC domain	220	450	IPR002182	GO:0043531
	Mal5g0694	1026	Gene3D	-	368	452	IPR042197	-
	Mal5g0694	1026	PANTHER	DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	26	1026	-	-
	Mal5g0694	1026	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	26	1026	IPR044974	GO:0006952
	Mal5g0694	1026	Gene3D	-	33	201	IPR035897	-
	Mal5g0694	1026	Pfam	TIR domain	35	211	IPR000157	GO:0007165
	Mal5g0694	1026	Gene3D	Ribonuclease Inhibitor	515	749	IPR032675	-
	Mal5g0694	1026	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	199	462	IPR027417	-
	Mal5g0694	1026	Gene3D	-	202	360	IPR027417	-
	Mal5g0694	1026	SUPERFAMILY	L domain-like	558	857	-	-
	Mal5g0694	1026	SUPERFAMILY	"Winged helix" DNA-binding domain	439	547	IPR036390	-
	Mal5g0694	1026	ProSiteProfiles	TIR domain profile.	34	198	IPR000157	GO:0007165
	Mal5g0694	1026	PRINTS	Disease resistance protein signature	403	417	-	-
	Mal5g0694	1026	PRINTS	Disease resistance protein signature	703	719	-	-
	Mal5g0694	1026	PRINTS	Disease resistance protein signature	232	247	-	-
	Mal5g0694	1026	PRINTS	Disease resistance protein signature	308	322	-	-
	Mal5g0694	1026	SMART	till_3	35	172	IPR000157	GO:0007165
	Mal5g0694	1026	SUPERFAMILY	Toll/Interleukin receptor TIR domain	25	175	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g0694	Mal-Chr5	11619075	11627622	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g0694	36	813	WRKY Transcription Factor Family	AT4G12020	34.689	2.96e-111	378

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0694	-		-	cam:101503346	1265.37