Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0679 ATGAATCACTCATGGCCATGGGGGACTTGTTCTGAATCTGATGTGCAACAATCATCTATGTCTGAAAATCTGACTTTGAAAATGAGTGTTTTGCCACAACAATGCCACAAGGCTAAACCACTAGTTTTTCGATTTCAAGACCAAGAATCTTCTTCGACTCAGTCAACTGGCAAATCTTATCTGGAAGTTGGTTCGGGACAATCAGGTCCAATTTCTGTCCAGTATAACAATTCCTCTGCATGTTCAACACTTAGCGAAACCGGCGGAAAGAGTGTGGAAGGTATCATCAGATCATCTGCAGGGAGTCAGGATTTTACTCTGCCTCCTTCTCAACTAGATCACAACCAATCGCTTGCTCATATTGCATTCCCTCATGCTGAGACATACTTTAATGGCCTACTAGCAGCTCCATATGGATCACGGAATAATGTTCATCATCCTCAGCTAGTAGGAATGACTCCCGCTCGGGTTCCTTTGCCTCTTAATCTTTGTGAGGAACCAATATATGTGAATGCAAAGCAGTACCATGCTATTATGAGACGTAGACAGTATCGTGCAAAGCTCGAAGCACAGAACAAACTCGTCAAAAATCGGAAACCATATCTACACGAGTCGCGCCATCTGCATGCATTGAAGAGAGCTAGAGGTTCCGGTGGTCGTTTTCTAAATACCAAAAAGCTCCAAGACCATGGCTTTAATGTTTCCACCACTACTCGGTTGAATCCGAATGGAAATGTGCTGGAATCTAAGGTACATCAAGTAGAAAAGTATAGAGATGGTGCTTCCACAACCACTTGTTCTGACGTCACAAGTGCTTCTAATAGTGACGACGTGTTCCAACAACATGAATCGGACTACAGATCATGTGGTTACCCGTCTCATATGCAGGATTTATCCGCCAATATCGGTTGA 912 0.4342 MNHSWPWGTCSESDVQQSSMSENLTLKMSVLPQQCHKAKPLVFRFQDQESSSTQSTGKSYLEVGSGQSGPISVQYNNSSACSTLSETGGKSVEGIIRSSAGSQDFTLPPSQLDHNQSLAHIAFPHAETYFNGLLAAPYGSRNNVHHPQLVGMTPARVPLPLNLCEEPIYVNAKQYHAIMRRRQYRAKLEAQNKLVKNRKPYLHESRHLHALKRARGSGGRFLNTKKLQDHGFNVSTTTRLNPNGNVLESKVHQVEKYRDGASTTTCSDVTSASNSDDVFQQHESDYRSCGYPSHMQDLSANIG* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0679 303 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 166 221 IPR001289 GO:0003700|GO:0006355
Mal5g0679 303 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 9 287 - -
Mal5g0679 303 SMART cbf3 163 224 IPR001289 GO:0003700|GO:0006355
Mal5g0679 303 ProSiteProfiles NF-YA/HAP2 family profile. 164 224 IPR001289 GO:0003700|GO:0006355
Mal5g0679 303 Gene3D - 164 225 - -
Mal5g0679 303 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 9 287 IPR001289 GO:0003700|GO:0006355
Mal5g0679 303 PRINTS CCAAT-binding transcription factor subunit B signature 198 221 IPR001289 GO:0003700|GO:0006355
Mal5g0679 303 PRINTS CCAAT-binding transcription factor subunit B signature 167 189 IPR001289 GO:0003700|GO:0006355
Mal5g0679 303 ProSitePatterns NF-YA/HAP2 subunit signature. 169 189 IPR018362 GO:0003677|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0679 Mal-Chr5 11361524 11363706 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0679 4 293 CCAAT-HAP2 Transcription Factor Family AT3G14020 45.364 3.12e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mal5g0679 CBFB_NFYA 4.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0679 K08064 - gmx:100500765 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0679 5 11361524 11363706 Mal5g0679 5 11361524 11363706 ECH
Mal4g0421 4 3646759 3650010 Mal5g0679 5 11361524 11363706 PCT