Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0678 ATGGACGCGCGCACACAGTATAATCCACGCACCGTCGAAGAAGTTTTCAGGGATTTCAAGGGTCGTCGTGCTGGTCTCATCAAAGCTCTCACCACTGATGTTGAAGAGTTCTATAACCAATGTGATCCCGAAAAGGAGAATCTGTGCCTATACGGTTTCCCTAGTGAGCAGTGGGAAGTCAATTTACCTGCTGAAGAAGTTCCGCCAGAGCTTCCTGAGCCTGTGCTGGGGATTAACTTTGCGAGGGATGGTATGCAAGAGAAAGACTGGATATCTTTAGTTGCTGTTCACAGTGATTCTTGGTTAATTGCCATTGCGTACTACTTCGGTGCCAGATTTGGGTTCGACAAATCTGACAGGAAGCACCTTTTCAATATGATCAATGATCTGCCGTCAATATTTGAAGTTGTTACTGGTGCAGCAAAGAAACAAGTCAAGGAGAAGTCTTCAGTTTCAAATCACAGTGGCAGCAAATCCAAGTCCAGCTCGAAAACGCGAGCTCCGGAACCCCAGGTTAAGCCACCGGCAAAGGCATTGGAGTTACCTAAAGACGAGGAGGTGGAAGAAATGGACGAGGAAGATGAAGATGAACATGGAGAGACCTTATGTGGTGCATGCGGTGAGCATTACGGCACTGATGAATTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGGAAATGTGTGAAGATCACCCCTGCTAGGGCTGAGCATATCAAGCAATACAAGTGTCCAGCATGCAGTAACAACAAGAGAGCTCGCCCTTGA 774 0.4729 MDARTQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWISLVAVHSDSWLIAIAYYFGARFGFDKSDRKHLFNMINDLPSIFEVVTGAAKKQVKEKSSVSNHSGSKSKSSSKTRAPEPQVKPPAKALELPKDEEVEEMDEEDEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSNNKRARP* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0678 257 Pfam PHD-finger 203 251 IPR019787 -
Mal5g0678 257 ProSiteProfiles Zinc finger PHD-type profile. 200 252 IPR019787 -
Mal5g0678 257 CDD PHD_AL_plant 202 252 IPR044104 -
Mal5g0678 257 ProSitePatterns Zinc finger PHD-type signature. 203 249 IPR019786 -
Mal5g0678 257 SUPERFAMILY FYVE/PHD zinc finger 192 253 IPR011011 -
Mal5g0678 257 MobiDBLite consensus disorder prediction 145 195 - -
Mal5g0678 257 SMART PHD_3 202 250 IPR001965 -
Mal5g0678 257 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 6 257 - -
Mal5g0678 257 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Mal5g0678 257 PANTHER CPG BINDING PROTEIN 6 257 IPR045104 GO:0006355|GO:0042393
Mal5g0678 257 MobiDBLite consensus disorder prediction 150 168 - -
Mal5g0678 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 193 251 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0678 Mal-Chr5 11273119 11277582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0678 7 256 Alfin-like Transcription Factor Family AT3G42790 72.800 4.20e-119 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mal5g0678 Alfin 1.1e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0678 - - gmx:100794662 433.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0678 5 11273119 11277582 Mal4g0420 4 3629007 3632707 ECH
Mal5g0678 5 11273119 11277582 Mal5g0678 5 11273119 11277582 ECH
Mal4g0420 4 3629007 3632707 Mal5g0678 5 11273119 11277582 PCT