LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0628	ATGGGAAATCAAAAGCTGAAATGGACCGGGGAAGAAGAAGATGCGCTTATCGCAGGAATCAAAAGACACGGCCCTGGAAAATGGAAGGCCATTCTCCTTGATCCTCAGTTTGGTCCCTTACTCACTTCTCGTTCCAACATCGACCTCAAGGATAAATGGAGGAATATGAATGTGGGTAATATTTCTCAACCTCCTAGGTTTACCAAGTGCAAAGCTGCTACTACTCCCGTTTCTTCTTCCAGTGTTGTTAATCAAACTGCTGTTGCTGCTCCTTCTGCTGTTTCTTCTTCTACTGCTGTTAATCAAACTGCTGCTGTTCCTTCTGATGTTGTTAACGCTGCTGATCCTCCTCCTCCTCCTCAAAATGACCAAGATGCTGTTAAAAACAACCCTCCTAGGTATGATGTCATGGTTTTTGAAGCTCTATCTACATTAAAGGATACTAATGGATCCGACCTAAATGCCATTGCTAGTTTCATTGAGCAAAAGCATCCGGTTCCTCAAAATTTTAAAAAGTCACTGAGTGCAAGGGTGAGGATGCTTGTGAATCAAGGGAAGCTTGAAAAGGTACAAAATTGTTACAAAATAAAAATAGAATCGCCATCCGTGACAAAATCACCTTCACCAAAACAAAAACAAAAGGAGGCCAGGCCGCCGCCACCTTCACCAAAACAAAAGGTGGTCAGGCGGCCGCGACGGAAATCATCAGTCTCTGATCATATGCTGAAGGAAGCAGCTGATACTGCAGCATACATAATTGCTGAAGCTGAAAATAAATCATATCTGGCAACTGAGGCAGTCAAGGAGACGGAAAGATTCTCACGCATGGCTGAAGAAAATGATGCGATGTTGTTGCTAGCAGAACAACTTTATGAACAATGTTTGCGCGGTGAAAATATCAAATGGGCTTAA	912	0.4298	MGNQKLKWTGEEEDALIAGIKRHGPGKWKAILLDPQFGPLLTSRSNIDLKDKWRNMNVGNISQPPRFTKCKAATTPVSSSSVVNQTAVAAPSAVSSSTAVNQTAAVPSDVVNAADPPPPPQNDQDAVKNNPPRYDVMVFEALSTLKDTNGSDLNAIASFIEQKHPVPQNFKKSLSARVRMLVNQGKLEKVQNCYKIKIESPSVTKSPSPKQKQKEARPPPPSPKQKVVRRPRRKSSVSDHMLKEAADTAAYIIAEAENKSYLATEAVKETERFSRMAEENDAMLLLAEQLYEQCLRGENIKWA*	304

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g0628	303	Gene3D	-	127	217	IPR036388	-
	Mal5g0628	303	PANTHER	SINGLE MYB HISTONE 4	1	301	IPR044597	GO:0003691
	Mal5g0628	303	Pfam	Myb-like DNA-binding domain	6	56	IPR001005	-
	Mal5g0628	303	ProSiteProfiles	Linker histone H1/H5 globular (H15) domain profile.	130	198	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mal5g0628	303	MobiDBLite	consensus disorder prediction	109	131	-	-
	Mal5g0628	303	CDD	H15	132	218	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mal5g0628	303	MobiDBLite	consensus disorder prediction	201	241	-	-
	Mal5g0628	303	Gene3D	-	2	58	-	-
	Mal5g0628	303	SUPERFAMILY	"Winged helix" DNA-binding domain	131	196	IPR036390	-
	Mal5g0628	303	SUPERFAMILY	Homeodomain-like	3	59	IPR009057	-
	Mal5g0628	303	PANTHER	TELOMERE REPEAT-BINDING FACTOR 4-RELATED	1	301	-	-
	Mal5g0628	303	CDD	SANT_TRF	7	57	-	-
	Mal5g0628	303	SMART	h15plus2	128	193	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mal5g0628	303	ProSiteProfiles	Myb-like domain profile.	1	57	IPR001005	-
	Mal5g0628	303	Pfam	linker histone H1 and H5 family	132	191	IPR005818	GO:0000786\|GO:0003677\|GO:0006334
	Mal5g0628	303	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	1	61	IPR017930	-
	Mal5g0628	303	SMART	sant	4	59	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g0628	Mal-Chr5	9957227	9961502	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g0628	1	303	Single Myb Histone (SMH) Gene Family	AT1G72740	42.857	1.39e-70	218

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Mal5g0628		Linker_histone	3.2e-11	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0628	K09422		-	gmx:780537	285.804