Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0625 ATGCTTGATTATGAATTAGTCCATTGCCAGGCATTGGTTTTGACCCCAACCACAGAGCTAGCTTTACAGATTAAGGAGGTTATGCAAGACCTTGGTGAATTCCATGGTGTAAGGATTCATGCTTGTGTCGGCAGGACAAGTGTTCCTAAGGAGGGTCGTCAGCGCTTTAAACAAGTTGGTTATAGTGTGTATGACATGGATGATCAGTGCTTTTTCCGAGTTGGTGTTCACATTATTGTTGGTACTCCGGAGCATGTGTATGACACGCTGCAGAGGGGGCGTACTCGCCTAGGTTGCATAAAGATGTTTGTTATGGATGAGATTGATGAAATGCTTTCACTTGGTTTCAAGGAGAAGATCCATGAAATCTTCGAGGTACTACCCTACGAAATTCAGGTCGGAGTAATGTCTGCTACAATGCCACCTGAAGCCCTTGAGATTACTAGGAAAATCATGAAAAAGCCTCTGAGAATTTTGGCGAAGCATGATGAGCTGACCCTTGAGGGTATCAAGCAGTTTTATGTCGATGTTGGCAAGGAAAAGTGGAAGCTAGAGACATTATTTGACATCAATGAGACTAACTCCATCACTCATTGTATCGTTTTTGTGAATACCGAGCGCAAAGTGGATTGGCTCACGGACAAGATGCGAAGCAGAGGTTATACAGTCTCGGCCATACATGATGACATGGACCAGAAGACTAGGAATATCATCGTGCACGGGTTCCAGTCTGGTTCTCCTCAAGTTCTCATTACCACCGATCCCTTGGTCCGTGGTATAGACGTGCAGGAAGTGTCTCTGGTCGTAAACTATGATCTCCCAACTCTACCTCAAAACTATCTCCACCGTATATGTCGTAGTGGGCGATTTGGAAGAAAATGTGTTGCTATAAATTTCATGACAGAGGATGATACAAGAATGTTATTAGATATTCAGCAATTCTACAATGTGGTTATAGAGCAGCTGCCATTTAATTTTGCTGATTTGTTCTGA 993 0.433 MLDYELVHCQALVLTPTTELALQIKEVMQDLGEFHGVRIHACVGRTSVPKEGRQRFKQVGYSVYDMDDQCFFRVGVHIIVGTPEHVYDTLQRGRTRLGCIKMFVMDEIDEMLSLGFKEKIHEIFEVLPYEIQVGVMSATMPPEALEITRKIMKKPLRILAKHDELTLEGIKQFYVDVGKEKWKLETLFDINETNSITHCIVFVNTERKVDWLTDKMRSRGYTVSAIHDDMDQKTRNIIVHGFQSGSPQVLITTDPLVRGIDVQEVSLVVNYDLPTLPQNYLHRICRSGRFGRKCVAINFMTEDDTRMLLDIQQFYNVVIEQLPFNFADLF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0625 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 312 IPR027417 -
Mal5g0625 330 Pfam Helicase conserved C-terminal domain 184 291 IPR001650 -
Mal5g0625 330 PANTHER RNA HELICASE 1 329 - -
Mal5g0625 330 Pfam DEAD/DEAH box helicase 9 143 IPR011545 GO:0003676|GO:0005524
Mal5g0625 330 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 169 330 IPR001650 -
Mal5g0625 330 PANTHER EUKARYOTIC INITIATION FACTOR 4A-1 1 329 - -
Mal5g0625 330 Gene3D - 166 330 IPR027417 -
Mal5g0625 330 SMART ultradead3 1 173 IPR014001 -
Mal5g0625 330 SMART helicmild6 210 291 IPR001650 -
Mal5g0625 330 CDD SF2_C_DEAD 170 299 - -
Mal5g0625 330 Gene3D - 2 165 IPR027417 -
Mal5g0625 330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 158 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0625 Mal-Chr5 9943700 9944911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0625 2 330 Eukaryotic Initiation Factors Gene Family AT1G72730 64.438 1.09e-150 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0625 K03257 - csv:101221456 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0412 4 3515191 3517436 Mal5g0625 5 9943700 9944911 PCT