Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0617 ATGGCGCAGATTCAGGGTCAGCATCAAACTCCGGCACCGGTTACAGCACCTTCGAACGGCGTCGTTTCGACACCGAACGCCGCGGATCAGGTCGTTACGACGTTGCACGTTGCTGGTCTTGAGTTGAATGTTAGCGATTCTCAGCTTTACGATCTGTTTGCTAATGTTGGACGAGTTTTATCCGTTAGGGTTTGTAGGGATTATGTTACGCGTCGTTCGTTTGGTTATGGTTATGTTAATTTCTTGAACCGTCAGGATGCGGCTAGGGCTTTGGATGTGCTGAATTTTACTCCACTGAACAACAAACCTATTAGGCTTGCGTATTCTCATCGTGATCCTAGTACTCCCAAGAGTGGCGCTGCTAATATTTCTTCTATCAAGTATGATGTATTCATTAGCTTTAGAGGAGAAGATACGCGCAAAACCTTCACTGCACAACTTCATCAAAATCTCTGCAAAGAGAACATTGAAACATTCATTGATTACAATCTTAGAAGGGGAAATGATGAGGTTGGACCTTCGTTGACAGAGGCAATCAATCAATCACGTATATCTATCGTTGTTTTTTCGGAAAACTATGCAAACTCAAAGTGGTGTTTGGTTGAACTCGCCCAAATAATGGAGTGTAGAAGATCTTATGACCAAATAGTCATACCTGTGTTCTATGAAGTTGATCCATCGAATGTTCGTAAGCAGAAAGGAAGTTACGAGACAGCATTCGCAAGATATGAGACCGAAGCCTCTACAAGTCATAAGTTTAGGGACACTTTACTAGAATGGAAAGCTGCTCTCACTCAAGCTGCCAATATATCTGGATGGGATTCTCGTACCTACAGGGATGATCCTCAACTCATCAACGATATTGTAAAGGATGTTTGGAAAATGTTGTCCCTGATGTATCCTAAAGAACTGAAAGACGTTATTGAAAATGAAAACAATAAACATATTGAATCATTGTTTAAGAAACATCAAAGAATTGGAATATGTGGTTTGGCAGGAATGGGAAAGACAACGATAGCAAAACAGATATTTGCCAAGCACTTTGCCCAATATGACAGTGTATGCTTGTTGGAAAATGTAAGAGAAGATACCAAAAAAATTGGAGCAACACAACTTTTCTCAGAGCTGCTAAGGAGACAATTTACTAAATCTCAAGTTATTGCACTTCACACATACATTAAGAGGAGGCTAACTAGTAAAAAAGTTTTCATAGTTCTTGATGATGTAGATGATACAGAACAGTTAGAAGATTTGTGTAGCTACCTTGATGAACTTGGATCAGACAGTAGACTCATTATCACAACAAGTAATAGACATATGCTTGTTGGAAGAGTTGATAAGATATACATGGTCAAAAAATGGAAGTTTGAAGAATCTTTAAAGCTTTTTAGCTTTGGAGCCTTCAGGCAAAGGCATGTGAACGAGGGCTACGAGATTCTCTCGAAAAGGGCAGTTGCATATGCAGGAGGCATTCCGTTAGTCTTAAAAGTTTTGGGTTCACATCTTTATTCTAGAGAACCTGATTTCTGGAATTCAGAATTGGATCATCTTGAGAAGAGTGTGGAATCCCTGAGCAGAATCGATAATGTGTTAAAAAGGAGTTATGATGTATTAACAACACGAGAGGTGGAAATCTTTCTGGACATTGCATTCTTTTTCAACGATGAAAATAAAGATTTCATCACAAGGATACTAGATGCATGTGGTTTTAGTGCTACTAGTGGAATAACACTACTTGAAGAAAAAGCTCTTGTGACCATTTCTAATGGCAATAGAATACAAATGCATAACTTACTACAAAAAGTGGCTTTGCAAATAGTTCGATGCGAAAAATATCGTATCCGCAGAGATCCAGGAGAGCGTAGCAGATTGTGTGATATTGAAGAAGTTCGTGATGTATTTGAAAGTAGCAAGGGTACCCATAAAGTCAAAGGCATACAATTTGATTTATCTCAAAATGTAAGGTTAACTGTTCGAGTTGACACATTCAACAAGATGACAGAATTAAGATTTCTTAGATTAAATGTCCCCTTGGGTAAGACGAGATTGACTACTGTGTCTATTCCTAAAGATATCAAGCCATTTTCTGATAAATTGAGATATCTTGAGTGGAATGGATACCCGTTGAAGACTCTTCCACAACCTTTCTGTGCTATGCTACTTGTTGAGATTCGTCTACCGCATAGTGATGTTGAATATCTTTGGCACGGGATACAGGAACTTGTGAATTTAGAAGGAATCGACCTAAGTGAGTGCAAAAAGTTGATTAAGCTCCCTGATTTGTCTGGGGCATCAAAGCTCAAATGGTTGTACCTAGCAGGTTGTGAAAGCTTATGTGAATTTAAGCCTTCTGTGTTTTCAAACGACACACTTGTCACTTTGATACTAGATAGGTGCATAAAACTGCGAAGTCTTATAAGTGGGAAGCATTTGACATCTCTTGAGAATATCAATGTATATGGTTGCTCAAGCCTAAAGGTATTTTCGCTGTCCTCGGATTCAATTGAAAGGTTGGATTTAAGTAAAACAGGAACCGAAATATTGCACTCATCAATTGGTCGTATGAGGAAGCTTGTATGCCTCAATTTAGAAGGTTTAAGACTGACAAATCTACCAAAGGAATTGTCTTGCCTGAGATCACTTACTGAACTTCGGTTTTCTAACTGCAATGTAGTAACTAAATCGAAGTTAGAAGCTGTGTTTGATGGCATGCTGAGATCATTGAAAATACTTTATTTGCAAGACTGTGGTAATTTGTTTGAACTACCTACGAATATCAATTCCTTATCATCATTGTATGAACTGACACTAGATGGAAGCAATGTGAAGATGTTGCCTGTTAGCATTGAGTACCTCTCAGCGCTAGAAATTTTGTCGTTAGATAGTTGTAGGAAGCTTCGCTTTCTTCCAAAGCTTCCTCCACACATCAAAGAGTTTAATGCCGGCAACTGTGATTCATTGGTGATAGTGTCCACTTTGAAAACTTTCTCAGAAAGCATGAAAGGAGAGAATAAGTACATTTCGTTCAAGAATGACATGGCATTGGGTGAACCTTCACTCGTTCGCATTTCAGAAGATGTCATATTGACAATGAAGAGTGCTGCATTGCACAACATGTCAATAGAAAAATTCAGTTTCAGAACGCATAGCTACAATTATGATAGTGTCGTGGTGGATTTACCAGGAAGCTCCATTCCAAAGGAATTTGAATACAGAACAACAGATTCCTCATCCATTACCCTTGATATTACTAAGTTTTACTATTACTCGCGAGGTTTCATTTTCGGTGTCATTGTTTCTCCAACCTATGGAACGATGGAAAATGGTCATGGTGCTCAAATCCAATGTCAATGTTATATGAAAGATGGAAGCAATGTGGGAGTTGTGTCTAAGTGGCATTGTAAAGCAATTAAGGATTTGAACATGGATCATGTTCTTTTGTGGTATGATCCATACCATTTTGACAGCATCCGCCACTTTCATAGCACTGTTTCTTTTGAATTCAGTGTTATAACTGATAATGGGGAACCTGGTGAGTTTTTCAGCGTCAAAGAGTGCGGGATCTATCCAATTTATACCTCGGAATTTCCTGTTCTTTTAGGCAAACTGAATTTTGAAGATCGCATAAAGTCATATTTGCATGGTAGCGTTCAATATGATTTAGAAAAACTCGAGACATTTAAAATACGTGAAGAGAAGGAAAGCACAAGCACATAA 3717 0.3855 MAQIQGQHQTPAPVTAPSNGVVSTPNAADQVVTTLHVAGLELNVSDSQLYDLFANVGRVLSVRVCRDYVTRRSFGYGYVNFLNRQDAARALDVLNFTPLNNKPIRLAYSHRDPSTPKSGAANISSIKYDVFISFRGEDTRKTFTAQLHQNLCKENIETFIDYNLRRGNDEVGPSLTEAINQSRISIVVFSENYANSKWCLVELAQIMECRRSYDQIVIPVFYEVDPSNVRKQKGSYETAFARYETEASTSHKFRDTLLEWKAALTQAANISGWDSRTYRDDPQLINDIVKDVWKMLSLMYPKELKDVIENENNKHIESLFKKHQRIGICGLAGMGKTTIAKQIFAKHFAQYDSVCLLENVREDTKKIGATQLFSELLRRQFTKSQVIALHTYIKRRLTSKKVFIVLDDVDDTEQLEDLCSYLDELGSDSRLIITTSNRHMLVGRVDKIYMVKKWKFEESLKLFSFGAFRQRHVNEGYEILSKRAVAYAGGIPLVLKVLGSHLYSREPDFWNSELDHLEKSVESLSRIDNVLKRSYDVLTTREVEIFLDIAFFFNDENKDFITRILDACGFSATSGITLLEEKALVTISNGNRIQMHNLLQKVALQIVRCEKYRIRRDPGERSRLCDIEEVRDVFESSKGTHKVKGIQFDLSQNVRLTVRVDTFNKMTELRFLRLNVPLGKTRLTTVSIPKDIKPFSDKLRYLEWNGYPLKTLPQPFCAMLLVEIRLPHSDVEYLWHGIQELVNLEGIDLSECKKLIKLPDLSGASKLKWLYLAGCESLCEFKPSVFSNDTLVTLILDRCIKLRSLISGKHLTSLENINVYGCSSLKVFSLSSDSIERLDLSKTGTEILHSSIGRMRKLVCLNLEGLRLTNLPKELSCLRSLTELRFSNCNVVTKSKLEAVFDGMLRSLKILYLQDCGNLFELPTNINSLSSLYELTLDGSNVKMLPVSIEYLSALEILSLDSCRKLRFLPKLPPHIKEFNAGNCDSLVIVSTLKTFSESMKGENKYISFKNDMALGEPSLVRISEDVILTMKSAALHNMSIEKFSFRTHSYNYDSVVVDLPGSSIPKEFEYRTTDSSSITLDITKFYYYSRGFIFGVIVSPTYGTMENGHGAQIQCQCYMKDGSNVGVVSKWHCKAIKDLNMDHVLLWYDPYHFDSIRHFHSTVSFEFSVITDNGEPGEFFSVKECGIYPIYTSEFPVLLGKLNFEDRIKSYLHGSVQYDLEKLETFKIREEKESTST* 1239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0617 1238 Gene3D - 294 447 IPR027417 -
Mal5g0617 1238 Gene3D - 455 539 IPR042197 -
Mal5g0617 1238 ProSiteProfiles TIR domain profile. 126 296 IPR000157 GO:0007165
Mal5g0617 1238 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 549 IPR027417 -
Mal5g0617 1238 Gene3D - 125 293 IPR035897 -
Mal5g0617 1238 SUPERFAMILY RNA-binding domain, RBD 19 118 IPR035979 GO:0003676
Mal5g0617 1238 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Mal5g0617 1238 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 126 1073 IPR044974 GO:0006952
Mal5g0617 1238 SUPERFAMILY L domain-like 648 971 - -
Mal5g0617 1238 PRINTS Disease resistance protein signature 325 340 - -
Mal5g0617 1238 PRINTS Disease resistance protein signature 488 502 - -
Mal5g0617 1238 PRINTS Disease resistance protein signature 396 410 - -
Mal5g0617 1238 PRINTS Disease resistance protein signature 739 755 - -
Mal5g0617 1238 Gene3D Ribonuclease Inhibitor 627 831 IPR032675 -
Mal5g0617 1238 Gene3D Ribonuclease Inhibitor 832 1002 IPR032675 -
Mal5g0617 1238 Gene3D - 1 124 IPR012677 -
Mal5g0617 1238 Pfam NB-ARC domain 313 536 IPR002182 GO:0043531
Mal5g0617 1238 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 105 IPR000504 GO:0003723
Mal5g0617 1238 SMART till_3 127 270 IPR000157 GO:0007165
Mal5g0617 1238 SUPERFAMILY "Winged helix" DNA-binding domain 526 611 IPR036390 -
Mal5g0617 1238 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g0617 1238 CDD RRM1_I_PABPs 35 113 - -
Mal5g0617 1238 Pfam TIR domain 127 303 IPR000157 GO:0007165
Mal5g0617 1238 PANTHER NB-ARC DOMAIN PROTEIN 126 1073 - -
Mal5g0617 1238 SMART rrm1_1 34 107 IPR000504 GO:0003723
Mal5g0617 1238 SUPERFAMILY Toll/Interleukin receptor TIR domain 124 273 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0617 Mal-Chr5 9810567 9816049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0617 124 964 WRKY Transcription Factor Family AT4G12020 31.561 7.94e-89 315