Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0601 ATGGGACATCACTCTTGCTGCAACAAACAGAAGGTCAAAAGAGGATTATGGTCACCTGAAGAAGATGAAAAACTCATCAAATATATTACAACTTATGGACATGGTTGTTGGAGTTCTGTTCCAAAACTTGCTGGTCTGCAGAGATGTGGAAAGAGTTGTAGATTAAGATGGATAAATTATCTAAGACCTGATTTGAAACGTGGAAGTTTCTCTCATCAAGAAGCAGAACTCATTATAGAACTCCACAGCATTCTAGGCAATAGGTGGGCTCAGATTGCCAAGCACTTACCTGGAAGAACAGATAATGAGGTGAAAAACTTTTGGAATTCAAACATAAAGAAGAAAATCCTTTCTCATAGTATCATTCCATCTTTCACCACATTTTCTGATATTCACACCCCCTACAATAATAATATTGGTTCTATGGAAAGTTTCTTCCCTATAACTGCAAACCCTAATGTGATTCTAAACTTCAATCATCACCATCATGATCAACTATACCATCCAACCTCATCTCCAAATCTACAAGGTAATTTTCACCAAATTGATACAAAGGTAGACATGATCAATAACCATTATAATGATAATTTCCTTCACATTCAAAATCCAACACTAGAAATAGTACAACCAATGTCTAATCCTTCCCCTTATGAAGATTCTTGGTCATTGGATTGTGTAGCTCTTCATCTCAATCCAAATCATGAAAATCAAATCTCAAAAAGTGATACCACCCCACTTAACAAATTAATCAACCCAATTGAATTAATGGAACAATATGATCAATGTCATGATTTGGTTGAACTTGAAGCCACTTTGCCTAAATTAGTAAATGATCAAAGCCTTGAGGATTATGCTCCAGAAAAAATTCAGAGCTACACCACTAGTGTTATTTATCCACAAGATCAAAATATGGAACCTATTCAATTGGATTACATTAATGATGCCCTCATGTTTATGTCATCATTGCCATCCTCAAGCAGCCAAACAGTCACAAATCCTATTATTCCTTTAGGATGGGAGTCTTAA 1026 0.3548 MGHHSCCNKQKVKRGLWSPEEDEKLIKYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSHQEAELIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSNIKKKILSHSIIPSFTTFSDIHTPYNNNIGSMESFFPITANPNVILNFNHHHHDQLYHPTSSPNLQGNFHQIDTKVDMINNHYNDNFLHIQNPTLEIVQPMSNPSPYEDSWSLDCVALHLNPNHENQISKSDTTPLNKLINPIELMEQYDQCHDLVELEATLPKLVNDQSLEDYAPEKIQSYTTSVIYPQDQNMEPIQLDYINDALMFMSSLPSSSSQTVTNPIIPLGWES* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0601 341 SMART sant 13 63 IPR001005 -
Mal5g0601 341 SMART sant 66 114 IPR001005 -
Mal5g0601 341 CDD SANT 69 112 IPR001005 -
Mal5g0601 341 PANTHER MYB DOMAIN PROTEIN 55 1 326 - -
Mal5g0601 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mal5g0601 341 CDD SANT 17 61 IPR001005 -
Mal5g0601 341 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Mal5g0601 341 Gene3D - 69 116 - -
Mal5g0601 341 PANTHER TRANSCRIPTION FACTOR MYB26 1 326 - -
Mal5g0601 341 Gene3D - 11 67 - -
Mal5g0601 341 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mal5g0601 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mal5g0601 341 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Mal5g0601 341 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mal5g0601 341 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0601 Mal-Chr5 9530170 9531595 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0601 1 118 MYB Transcription Factor Family AT3G13890 92.373 1.13e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g0601 Myb_DNA-binding 6.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0601 K09422 - gmx:100785147 429.483