Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0587 ATGGTAAAAGGTTTAATGATGTTTCAACAACAACAAGTGGTGGATGAAAACATGTCAAATTTAACTTCTGCATCTGGTGAAGCTAGTGTTTCTTCTGGTAACAGAACTGAAATTGGTACAAGTAGTAGTTACCCTCAAGTTCAACAACAATACTTGGTTCCTCCAACACAATCTCAATCTCAACCAATCAAAAAAAAGAGAAACCTTCCTGGTAACCCAGACCCTGATGCTGAGGTTATAGCTATGTCACCAAAGAGTTTACTAGCAAAGAATAGATTCATTTGTGAGATCTGTAACAAAGGCTTTCAAAGGGATCAAAATCTTCAACTTCATAGAAGAGGTCATAATTTACCATGGAAGTTGAAGCAAAGAACAAGTAAAGAGATTAGAAAGAAAGTTTATGTGTGTCCAGAACCAACTTGTGTGCATCATGATCCATCTAGAGCATTAGGGGATTTGACTGGAATCAAGAAGCACTTTTCCAGAAAACATGGTGAGAAGAAGTGGAAATGTGAAAAATGTTCAAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCAAAAACATGTGGCACTAGAGAATATAGATGTGACTGTGGAACCCTCTTCTCAAGAAGGGACAGTTTCATAACACATAGAGCATTTTGTGATGCATTAGCAGAAGAGAGTGCTAGAACAATGACAAATACATCAATTCCAATTTTACCCTCACAACAACCTTCATCATCATCTTCTCATCATCACATGATAAATCTACAAACCCAATTCAATAATCCACAACAAGATCTTCATAATTTCCCATTATTGAAAAAAGAGCAACATAATCAAAGTTTCAACCTTTCTGAAATTCCACCTTGGCTTGGCCCACATAATGTTGATCATCTTTCATCATCAACATCATCATCAATATTCTCACAAAATAATCAATTTTCATCACAAACACAACATCATCATCAAGAAAACCCTAACCCTAGTCTTGTTCATGTTCCTGGACCCACACTCCCTCCTTACCAAACAGTACCTTCATCACACATGTCAGCTACTGCATTGTTACAGAAAGCAGCTCAAATGGGTGCAACAATGAACAGAACTGCTTCTGCTTCTTCACCAGCTATGAATATTAGGACCCACCAAGTTGATTCTGATTCTCTCAACAATGTCTCTGGTAATTTTGGTTTGAATTTGTTGTCATCATCATCATCACATGAACAACAACAAAACACACCAACAACTACTACAACTTCTACATATCTTCATAACATTCATGATGTTATGTTTTCTTCTACTTCATCTCCTTCTGGATTTGAAGCAACCAACTTTGATGAAATGTTTGGTGGCATTATGAATTCAAAGAAAGATAATATCTCTAAAACAACCACTTCCACCACCGCCGATGACGGTGGTGGTGGCGGCGGCGGTGGTGGAGGAAATGAAGGATTGACTAGAGATTTCTTGGGTCTTAGGCCATTAATGTCACATAGTGATATTCTAAGTATTGCAGGGATTGGAAACTGTATGAATGATCAACAACAACAAAATCAATCTCAAAAGCCATCATGGCAAGGTTAG 1572 0.374 MVKGLMMFQQQQVVDENMSNLTSASGEASVSSGNRTEIGTSSSYPQVQQQYLVPPTQSQSQPIKKKRNLPGNPDPDAEVIAMSPKSLLAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARTMTNTSIPILPSQQPSSSSSHHHMINLQTQFNNPQQDLHNFPLLKKEQHNQSFNLSEIPPWLGPHNVDHLSSSTSSSIFSQNNQFSSQTQHHHQENPNPSLVHVPGPTLPPYQTVPSSHMSATALLQKAAQMGATMNRTASASSPAMNIRTHQVDSDSLNNVSGNFGLNLLSSSSSHEQQQNTPTTTTTSTYLHNIHDVMFSSTSSPSGFEATNFDEMFGGIMNSKKDNISKTTTSTTADDGGGGGGGGGGNEGLTRDFLGLRPLMSHSDILSIAGIGNCMNDQQQQNQSQKPSWQG* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0587 523 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 115 IPR013087 -
Mal5g0587 523 MobiDBLite consensus disorder prediction 452 467 - -
Mal5g0587 523 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 504 - -
Mal5g0587 523 Pfam Zinc-finger double-stranded RNA-binding 93 115 IPR022755 -
Mal5g0587 523 MobiDBLite consensus disorder prediction 298 326 - -
Mal5g0587 523 Gene3D Classic Zinc Finger 74 139 - -
Mal5g0587 523 SUPERFAMILY beta-beta-alpha zinc fingers 92 189 IPR036236 -
Mal5g0587 523 MobiDBLite consensus disorder prediction 24 66 - -
Mal5g0587 523 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 20 504 - -
Mal5g0587 523 SMART c2h2final6 169 189 IPR013087 -
Mal5g0587 523 SMART c2h2final6 93 115 IPR013087 -
Mal5g0587 523 SMART c2h2final6 134 164 IPR013087 -
Mal5g0587 523 MobiDBLite consensus disorder prediction 298 323 - -
Mal5g0587 523 Gene3D Classic Zinc Finger 147 227 - -
Mal5g0587 523 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Mal5g0587 523 MobiDBLite consensus disorder prediction 452 481 - -
Mal5g0587 523 MobiDBLite consensus disorder prediction 24 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0587 Mal-Chr5 9275610 9277785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0587 18 523 IDZ Gene Family AT3G13810 47.849 9.01e-143 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g0587 zf-C2H2_jaz 7.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0587 K25870 - gmx:100808344 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal4g0393 4 3282309 3285273 Mal5g0587 5 9275610 9277785 PCT