Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0583 ATGAACAACAAAAACAACAATAGCACCTCTCAAGCATGTGCTGCATGTAAATACCAACGTAGAAAATGTGCACGTGATTGCATTCTAGCACCTTATTTTCCTCATGATCGTCAAAGACAATTCCTTAATGCACACAAATTATTTGGTGTTAGCAACATTAATAAAATCATTAAATGTCTTGATCCTCCTCTTAAGGATCAAGCCATGAGGACAATTATTTTTCAATCTGATATGCGGGCCAATGATCCTATTGGTGGTTGTTATAAATATATACAAGATCTTCAAGCTCAAATTGAATATTATAAAACAGAACTTGATCTTGTTCATCAACAACTCGCGATTTTTCGAGCACAATCTCAACAACAACAACAACAAATACAAGTTAATTATGGTGATCAAGTTATTATGAATTCAGATTCATTGTTAGGTTTTTGTAATCCATCAGGATCTATTAATTCGGCTACCGCACCGGCTCATTATCATTACAATGCTCAACAACAAGTTGTGCCACAATTACAAGAACAGGAACAAGAACAATACATTATGATGCAAGAAAGAAATAGCAATAGTATTGATAATACTCCTTTGCAACAACATATTAATAATTGGGGGGCTATGCAAAGCTCTATTTCTCTATCATCTTTGTCATTGCATGGCCAAAGTAGTAATGCTAGTGATGAGTATGATCATAAGCCAATTCTTGATGTACCTTGTGATGAAAGAAATGAATTAGGGTTCGACTCCGAAGAAATACTTCACCACAGTGATGAAGCGGTTTTGTTTAAGATAGACGATGGATTAATTAAAGGAGAGGGTGACTACATTCAACAAACAAAAATTCAAGCTCAAGATCAAGATCATGATCTGAAAGGTGCAGCAACATTGTTTACTTTGACAAATTGTACAAGTTGA 912 0.3465 MNNKNNNSTSQACAACKYQRRKCARDCILAPYFPHDRQRQFLNAHKLFGVSNINKIIKCLDPPLKDQAMRTIIFQSDMRANDPIGGCYKYIQDLQAQIEYYKTELDLVHQQLAIFRAQSQQQQQQIQVNYGDQVIMNSDSLLGFCNPSGSINSATAPAHYHYNAQQQVVPQLQEQEQEQYIMMQERNSNSIDNTPLQQHINNWGAMQSSISLSSLSLHGQSSNASDEYDHKPILDVPCDERNELGFDSEEILHHSDEAVLFKIDDGLIKGEGDYIQQTKIQAQDQDHDLKGAATLFTLTNCTS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0583 303 Coils Coil 91 111 - -
Mal5g0583 303 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Mal5g0583 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 8 240 - -
Mal5g0583 303 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
Mal5g0583 303 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0583 Mal-Chr5 9204091 9205239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0583 11 125 AS2 family AT3G13850 72.174 1.48e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g0583 LOB 1.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0583 - - pvu:PHAVU_010G138500g 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0583 5 9204091 9205239 Mal5g0583 5 9204091 9205239 ECH
Mal4g0391 4 3255542 3256975 Mal5g0583 5 9204091 9205239 PCT