LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0579	ATGTCTATGGCTATGGCTGCTTCTTCTTCCTCTCACGCTGCTGCTCTGAAGAAATATGAAGTTTTCATCAGCTTTCGAGGCGAAGACACTCGCTCTGGTTTCACAAGCCATCTTCACGATGCTTTGTGCCGAAACTATATTCATACTTACATAGACTACAGAATCCAAAAAGGAGATCAAGTTTGGGCAGAACTCTTGAAAGCTATCAAGGAATCCACTTTGTTTCTTGTGGTTTTCTCGGAGAACTATGCGTCTTCAACATGGTGCTTGAACGAACTCGTTGAAATAATGGAGTGCCATAAAAATGGACAAGGTGGTGTTGTTATTCCTGTGTTCTACCATGTTGACCCTTCACATGTAAGGAAACAAACTGGGAGTTACGGCACTGCATTGGCAAAACACAAGAAGCAAGGAAACAATGATGATAAGAAGATGCAAAATTGGAAGAATGCTCTTTTTCAAGCAGCTAATTTATCTGGTTTTCATTTTACAACATACAGGACTGAATCTGATTTAATTGAAGGCATTACTAGAGATGTATTAGGAAAATTAAATCACCGGTATAGAAATGAAGATACATCTAATTTTATACTCAATGAAACCTATTGGAGCATTCACTCTTCAATAAAACTTGAGTCAACAGATGTTCAAGTCATTGGACTTTGGGGCATGGGGGGCATGGGTAAGACAACCCTTGCTACTGCTTTGTTTAACAAGGTCTCATTTCAGTATGAAGGCAGATGCTTCTTAGAAAATGTGACAGAAGTATCAAAAAGAAGTGGAATCAATCGCACATTCAACCAACTTCTTTCCAAGTTACTAAGGGAAGATCTTGGTATTGACACTCCAAAAGTAATACCATCCATGATCAGGAGAAGACTCAAACGCATGAAATCTTTCATTGTGTTAGATGATGTACATACCTTAGAACTTCTGCAAAACATGATTGGAGTGGGACATGGTTTAATAGGAGCTGGTAGCATAGTCATTGTGACGACTAGGGATAGGCATGTGCTGGAAAGTGGAGGAATTGATAAAATTTATGAAGTTACGAAGATGAACTCCCAAAATTCCCTCAAACTTTTCTGCTTGAATGCTTTTGGCGTTGTCTTGCCTAAGGAGGGATATGTGGAGCTCTCAAAAAGAGCCATTGATTACGCCAAAGGCAACCCTTTAGCTCTGAAAGTTCTAGGATCATCTCTTTGTGGCAAAAGTGAAATAGAATGGAATTGTGCACTAGCTAAATTGAAAAAAAATTCAAATGCCGAAATTGATAGGATATTGAGATGGAGTTGTGATGAATTGGATGATGATGAGAAAAATATACTTTTGGACATTGCATGCTTTTTCAAAGGGCATGAAAGGAATAGCCTAACAAAAATATTAAATGAGTGTGGTTTCTTTGCTCATATAGGGATAAGTCGTCTATTAGACAAGGCTCTTATAAGAGTTGACTTTAAAAATTGCATACAAATGCATGACTTGATACAAGAATTGGGAAAACAAATTGTTCGTGAAGAATGTCTTAAGAATCCCGGACAACGCAGTAGATTATTTGATCCTAAGGAAGTTTGTGATGTATTGAAAAATAATAGAGGATCCGAGATTGTTGAAGCCATATTTTTCGATGCTACTGAATATACAGATTTAAATTTACAACCTGAAGCATTTAAAAAGATGATAAATCTAAGGTTACTTGCTTTTAAAGACTACAAGGGAAATAAATCTGTAAGCCTTTCACATGGTCTTAGTTTATTGCCAGAAAATCTGAGATATTTACTATGGGATGGCTATCCTTTGAAATCTCTGCCTCCAAACTTTTGTCCTGAAATGCTTGTGGAGCTTTCCTTGATAGGAAGCCATGTGGAAAAACTTTGGAATGGAGTACTGAATTTGCCGAATTTAGAAAAAATTGACCTCAGTGACTCCAAAACGCTGATAGAGTGTCCAAATGTGTCTGGTTCCCCAAATCTAAAACGTGTAGTGCTTGGTTATTGTAAAAGCATGCCTGAAGTTGATTCATCAATTTTCCATCTCCAAAAGCTTGAAGTTTTAAACGTGATTGGATGTACGTCTCTTAAGAGCCTTTCCAGTAACACTTGTTCACCAGCCCTCCTTGAATTGAATGCTATGGAATGCATCAATCTCCAGGAGTTCTCAGTCCCATTTGCTTCCGTTGATTCTTTGTTTTTGGGTTTATCAAAGTGGGGTGGGAATGAACTTCCATCATCAATATTGCATACAAAAAATCTTGAAAACTTTGTCTTTCCTATCAGTGATTGTCTTGTTGATCTTCCTGAAAACTTTTGCAATACTATTTTTCTTATGAGTCCACAGAATCGTAAACAGGACCCTTTCATCACCTTAGATAAAATACTTTCTAGTCATGGCTTCCTGAGTGTAAAAAAATTAACCTTTTATGATATTCCTATCATGTCTGAAATCCCAGACAGTATCTCCTTACTATCTTCATTGGAGACTTTAACACTAATTGATATGGCCATTAAAAGCTTGCCTGAAACCATTATGTATCTTCCCCAAATCGAACAGCTTGCTATTTACGATTGTAAATTGCTTCAATCTATTCCGGCGCCTTCACGGTGCATTCCATTATTGGTTGTCTGGAATTGTGAATCTCTTGAGAAAATGTTTAGTTCAACGGATGAACCATATGATGGACCCAATACTTGTTTTGTTGTGTTCCTTAACTGCAAAAAATTGGATCCACATTCATACCAAGCACTTTTGGAAGATGCCATGGCTTTGATTGAACTTGCAGCAAGACAAAATTCAGAAAATGAAGATGCATCTTCTATTATTTGGAAAATCTTACCTGCTATGCCTGGCATGGAAAATTGGTTCCATTACTCTTCTACACAAGTTTCTACGACTCTTGAGCTTCCTTCTAATTTGTTGGGTTTTGCCTACTACTTGGTTCTTTCTCAAGGCCATATGGAATATGATGTAGATTTTGGATGTGAGTGCTACTTCGACAATAACTCAGGTGAAAGAATTTGTATAACAAGTTTCAAAAGAGGCATCTACTTGAGACATCCCTGGACTCGTGAAACTTCAGTCCACATGATTTCAGATCATTTGGTTTTATGGTATGATCCACGAAGTTGCAAGCAGATAATGGATGCAGTTGAACAAACAAAATCCATTAATGATGTGAACAGCACTAGTTACAGTCCAAAGCTTACATTTACATTCTTTATTGATGAAGATCTATACGATGAAGTAGTGATAAAAGAGTGTGGGTTTCGCTGGATTTATCAAAAAGACACAGTTTCTTCAACAATTTCTGAATTCCACGATGAAGAAGAAACTGCGTTTTTATCAGATTTTCAATCCAATGATCAAGAAGAAATTGTTCCTCCAACAAATGATTTGAGGTATTCACTTGAAGAGCTCATGCATATTGGATTTGGCGTAGAGCACATGAACACTTTGTTTGGTTCGACAGAAGAAAAAAGCAACAGCTGA	3486	0.3726	MSMAMAASSSSHAAALKKYEVFISFRGEDTRSGFTSHLHDALCRNYIHTYIDYRIQKGDQVWAELLKAIKESTLFLVVFSENYASSTWCLNELVEIMECHKNGQGGVVIPVFYHVDPSHVRKQTGSYGTALAKHKKQGNNDDKKMQNWKNALFQAANLSGFHFTTYRTESDLIEGITRDVLGKLNHRYRNEDTSNFILNETYWSIHSSIKLESTDVQVIGLWGMGGMGKTTLATALFNKVSFQYEGRCFLENVTEVSKRSGINRTFNQLLSKLLREDLGIDTPKVIPSMIRRRLKRMKSFIVLDDVHTLELLQNMIGVGHGLIGAGSIVIVTTRDRHVLESGGIDKIYEVTKMNSQNSLKLFCLNAFGVVLPKEGYVELSKRAIDYAKGNPLALKVLGSSLCGKSEIEWNCALAKLKKNSNAEIDRILRWSCDELDDDEKNILLDIACFFKGHERNSLTKILNECGFFAHIGISRLLDKALIRVDFKNCIQMHDLIQELGKQIVREECLKNPGQRSRLFDPKEVCDVLKNNRGSEIVEAIFFDATEYTDLNLQPEAFKKMINLRLLAFKDYKGNKSVSLSHGLSLLPENLRYLLWDGYPLKSLPPNFCPEMLVELSLIGSHVEKLWNGVLNLPNLEKIDLSDSKTLIECPNVSGSPNLKRVVLGYCKSMPEVDSSIFHLQKLEVLNVIGCTSLKSLSSNTCSPALLELNAMECINLQEFSVPFASVDSLFLGLSKWGGNELPSSILHTKNLENFVFPISDCLVDLPENFCNTIFLMSPQNRKQDPFITLDKILSSHGFLSVKKLTFYDIPIMSEIPDSISLLSSLETLTLIDMAIKSLPETIMYLPQIEQLAIYDCKLLQSIPAPSRCIPLLVVWNCESLEKMFSSTDEPYDGPNTCFVVFLNCKKLDPHSYQALLEDAMALIELAARQNSENEDASSIIWKILPAMPGMENWFHYSSTQVSTTLELPSNLLGFAYYLVLSQGHMEYDVDFGCECYFDNNSGERICITSFKRGIYLRHPWTRETSVHMISDHLVLWYDPRSCKQIMDAVEQTKSINDVNSTSYSPKLTFTFFIDEDLYDEVVIKECGFRWIYQKDTVSSTISEFHDEEETAFLSDFQSNDQEEIVPPTNDLRYSLEELMHIGFGVEHMNTLFGSTEEKSNS*	1162

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g0579	1161	Gene3D	-	15	189	IPR035897	-
	Mal5g0579	1161	SUPERFAMILY	L domain-like	491	864	-	-
	Mal5g0579	1161	SMART	till_3	18	158	IPR000157	GO:0007165
	Mal5g0579	1161	Pfam	TIR domain	18	192	IPR000157	GO:0007165
	Mal5g0579	1161	SMART	AAA_5	215	354	IPR003593	-
	Mal5g0579	1161	Pfam	NB-ARC domain	212	426	IPR002182	GO:0043531
	Mal5g0579	1161	SUPERFAMILY	Toll/Interleukin receptor TIR domain	10	161	IPR035897	-
	Mal5g0579	1161	ProSiteProfiles	TIR domain profile.	17	184	IPR000157	GO:0007165
	Mal5g0579	1161	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	13	1061	-	-
	Mal5g0579	1161	Gene3D	-	352	436	IPR042197	-
	Mal5g0579	1161	Gene3D	-	190	343	IPR027417	-
	Mal5g0579	1161	Gene3D	Ribonuclease Inhibitor	786	891	IPR032675	-
	Mal5g0579	1161	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	13	1061	IPR044974	GO:0006952
	Mal5g0579	1161	Gene3D	Ribonuclease Inhibitor	522	731	IPR032675	-
	Mal5g0579	1161	PRINTS	Disease resistance protein signature	218	233	-	-
	Mal5g0579	1161	PRINTS	Disease resistance protein signature	387	401	-	-
	Mal5g0579	1161	PRINTS	Disease resistance protein signature	630	646	-	-
	Mal5g0579	1161	PRINTS	Disease resistance protein signature	293	307	-	-
	Mal5g0579	1161	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	196	446	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g0579	Mal-Chr5	9010248	9122553	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g0579	17	889	WRKY Transcription Factor Family	AT4G12020	31.716	2.26e-98	343

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0579	-		-	mtr:MTR_8g018480	1694.86