Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0560 ATGGCTTACTTTGAGAATACAATGGGTGATTTCTCATTGATTTGTCTCAAGGAATTTGATTTCACTTCTTTATGTTCTCTAAGGAGCACAATAGACACTATCAATGTACTTTTTGTCTGTGTCTACTACACTTCTTTGTTTATCAGTTTAATCAGAAAAACTTCTGCAAGTAGGAGCTACACAAGAAGTTGGATTTTCCAACTTGCCTCAATCTTTTGTGCTCTTATTAGCTTGTGGAATCTCATATACAAAACTGGTAACTCTAAGGAGCTGAGTTGGTTAGCTGGCTTTATCAGAGGATTCATTTGGATTTCTTTAACAGTTTCTTTGCTTGTTCAGAGACTCAAATGGATTAAAATACTAAACTCTGTCTGGTGGGCATCTTCATGTGTATTGGTTTCAGCTCTCAACATTTACATTCTGTTTAAAGGTCATCATGTCATTGAAACTTTTGATATCACAATATGGCTTGTACACTTTCTACTTCTATTATGTGCCTTCAAAAACCTTGGTCATTTAGGAACTCATAGTGTCCAAGAATGTTTATCTGAGCCACTACTATCTCAAAAAATTGAAACTAAACAAACAGGACTAGGCCAAGCTACTTTTCTTAGCAAGTTGATTTTCTCTTGGGTTAGTTCTTTACTCAGTTTAGGTTACTTAAGGCCACTAGCTCTTGAAGACATACCTTCACTTGTTTCTGAAGATGAAGCAAAAATGGCCTATAAAATATTTGTTCATGTTTGGGAGTCACTCGTAAGAGAGAGGACTAACAATACAAAGAACTTGGTTCTTTGCTCTGTAGTTAAAACATACTTAAAAGAAAATGTATTAATAGCATTTTATGCATTACTCAGAACTATTTCTATTGTAGTTTCACCCCTAATACTCTATGCTTTTGTTAACTACTCAAAAAGAACTGAGGCAGATCTCAAACAAGGTCTTTCCATAGTTGCTTTTCTGATTCTCACCAAATTGGTTGAGTCTTTGTCTCAAAGACATTGGTTTTTTAACTCAAGAAGGTCAGGTATGAAAATGAGATCAGCAATGATGGTGGCAGTTTATCAAAAGCAACTAAAGCTTTCAAGCTCAGCAAGGACAAGACATTCAACCGGAGAAATTGTGAATTACATTGCAATTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCATTGCAGCTTGTTTTGTCCATTGCTATTCTTTTCTGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTGCCTCTTCTCATCTGTGGACTTCTCAATGTACCACTTGCAAGGATCCTACAAAACTGTCAGTTAGAGTTTATGAATGCACAGGATGAACGTCTTAAGTCAACTTCAGAGATTCTAAATAGTATGAAAATCATTAAGTTACAATCTTGGGAAGAAAAATTCAAAAACATAGTTGAGACCCTACGAGATAAAGAAATCAAATGGCTGTCTAAGATACAGTTCCTGAAAGCTTTCGGAACATTTCTTTATTGGCTGTCTCCTGCAGTTATTCATGCTGTTGTCTTCCTTGGATGCGCTCTTTTCGATAGAGCACCGTTGAATGCTGAAACCATTTTTACAGTTCTTGCAACTTTGAGGAACATGGGAGATCCTGTTCTTATGATCCCAGAGGCTCTATCTATTATGATTCAAGTTAAGGTTTCCTTTGACCGTCTCAACACATTCATGCTTGATGAAGAGATAAGTAATGATGATAATGGAAGAAACAGAAAGCAATGTTCAGTCATTGCTATGGCAATTCAAGCTGGCAACTTCATTTGGGATCATGAATCTGTGTCCCCAACTTTAAAAGATGTGAATTTAGAGATAATACGGGGACACAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTCTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTTAATGTAGGTAGCACACTAGCATATGTTTCTCAATCATCTTGGATACAAAGTGGAACAGTTCGAGATAATATACTCTTCGGCAAACAAATGCACAAAGAAAGATATGAGAATGCCATTAAAGTATGTGCCTTAGATAAGGATATTGATGATTTTAGCTATGGTGATCTTACAGAAATAGGTCAGAGAGGAATTAACATAAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTCGAGCAGTCTACAACGATGCTGATATCTATCTCCTCGATGACCCTTTCAGTGCAGTTGATGCGCACACTGCAGCTATTCTGTTCAATGAGTGTGTCATGACTTGTCTAAGAGAGAAAACAGTCATTTTAGTGACGCATCAAGTGGAGTTTCTCTCGGAAGTTGATACAATATTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGCAGTTATCAGAATCTCTTGAAAGTTGGGACAGCATTTGAACAACTTGTGAACGCCCATAAAGAAACACTTACCGAACTAAATCAAAATAATGAAAATGATGTTTTGGCTAATCCACAAGACTCTTGTTTTTATCTCACTAAAAATCAGAGTGAGGGGAAGATTTCTAACAAGGGTCAACTAACAGAAGAGGAAGAGAAAGAGTTTGGAGATGTTGGCTGGAAGCCATTATGGGATTATATTTCTTATTCTGGGGGGTCATTCATGCTGTGTTTTATCATGTTAGCAAAATCAGCATTTATAGTTTTGCAGACTGCATCGTCCTTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTAACTAGGGTCGCCTTGATTACAGTTTATTCATTGATTTGCTTTGCTAGCATTGTGTTTGTATATCTAAGGTCTTACTTGAATGCGCATCTCGGATTAAAAGCTTCTAATGTCTTCTTCTCAAGCTTCACTACATCTATCTTCAATGCTCCAATGCTATTCTTTGATTCGACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAGTATTTTGGACTTTGATATGCCTCATTCCATCCTCTTTGCATTATCTGTAGCAATTGAAATTCTGGTAATAATTTGCATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTACAATGGTGGCATCAATATTCATTCAGCAATATTATCAAGCAACTGCAAAGGAACTAATGCGGATCAATGGAACCACCAAAGCTCCAGTCATAAATTTTGCAGCTGAGACATCACTTGGAGTGGTTACTGTAAGATCATTCAATATGGTTGACAGGTTTTTCAAAAACTATTTAAAACTTGTGGACATAGATGCTTCATTGTTCTTTGAAGCGGGTGCTACATTCTTTCATTCTAATGTGGCCATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAAGTTTGACTGTCATCACTGCAGCTTTGTTTCTTATTCTACTTCCTCACGGATACGTGTCCCCAGGACTTGTGGGATTGTCTCTTTCTTATGCTTTTATTTTGACAGCAGCCCAAATATTTTGGACTCGGTGGTTTTCCAACTTATCAAACTACATTATCTCTGTTGAAAGAATCAACCAATTCATTCATATTGCAGCTGAGCCTCCTGCCATTGTGGAGGATAACCGACCGCCGTCTTCATGGCCTTCCAAGGGTAGGATTGATGTTCATGGCTTAGAGGCAACATTGCATCTATGTCTTTGTGTTCAACTCTACTTTCAATATTTTCATATAATTTATGTTTTCGTGCATTGGTTTCAGATTAGATATCGCCCTAGCTCTCCATTGGTCCTTAAGGGAATCACTTGTACATTTCAAGAAGGGAGTAGGGTGGGAGTTGTTGGAAGGACAGGAAGTGGAAAAAGTACACTGATTAGCGCTTTGTTTCGCTTAGTTGAGCCTTCAACAGGTGATATTCTCATAGATGGGATTAACATATGCTCAATCGGGTTGAAGGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACTCTTTTCAAGGGCAGCATTAGGACTAACCTTGACCCTCTAGGCCTTTACTCGGATGATGAAATATGGAAGGCTTTGGAGAAATGTCACCTAAAGGAAACCATCCGCAGGCTACCAAGTCTCTTGGACTCTTCTGTGAGTGATGAAGGTGGAAATTGGAGCTTAGGACAGCGCCAACTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGGAACAGGATTCTAGTTCTGGATGAAGCTACTGCATCCATTGACTCTGCCACAGATGCAATTCTACAAAGAGTAATTAGACAGGAATTTGCAGAATGCACGGTTATAACCGTTGCTCACAGAATTCCAACTGTAATAGACAGTGACATGGTCATGGTTCTATCTTATGGGAAACTGATGGAATATGATGAGCCTTCAAAGCTAATGGACACAAACTCTTCATTCTCTAAGCTGGTAGCTGAATATTGGTCTAGCTGCAGGAAAAGTTCCTTCCCAAACATTAGAAGCCAGAAACTATGA 4461 0.382 MAYFENTMGDFSLICLKEFDFTSLCSLRSTIDTINVLFVCVYYTSLFISLIRKTSASRSYTRSWIFQLASIFCALISLWNLIYKTGNSKELSWLAGFIRGFIWISLTVSLLVQRLKWIKILNSVWWASSCVLVSALNIYILFKGHHVIETFDITIWLVHFLLLLCAFKNLGHLGTHSVQECLSEPLLSQKIETKQTGLGQATFLSKLIFSWVSSLLSLGYLRPLALEDIPSLVSEDEAKMAYKIFVHVWESLVRERTNNTKNLVLCSVVKTYLKENVLIAFYALLRTISIVVSPLILYAFVNYSKRTEADLKQGLSIVAFLILTKLVESLSQRHWFFNSRRSGMKMRSAMMVAVYQKQLKLSSSARTRHSTGEIVNYIAIDAYRMGEFPWWFHITWTCALQLVLSIAILFCVVGIGALPGLVPLLICGLLNVPLARILQNCQLEFMNAQDERLKSTSEILNSMKIIKLQSWEEKFKNIVETLRDKEIKWLSKIQFLKAFGTFLYWLSPAVIHAVVFLGCALFDRAPLNAETIFTVLATLRNMGDPVLMIPEALSIMIQVKVSFDRLNTFMLDEEISNDDNGRNRKQCSVIAMAIQAGNFIWDHESVSPTLKDVNLEIIRGHKIAVCGPVGAGKSSLLYAILGEIPKISGTVNVGSTLAYVSQSSWIQSGTVRDNILFGKQMHKERYENAIKVCALDKDIDDFSYGDLTEIGQRGINISGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNECVMTCLREKTVILVTHQVEFLSEVDTILVMEDGKVIQSGSYQNLLKVGTAFEQLVNAHKETLTELNQNNENDVLANPQDSCFYLTKNQSEGKISNKGQLTEEEEKEFGDVGWKPLWDYISYSGGSFMLCFIMLAKSAFIVLQTASSFWLAIAIEIPKVTRVALITVYSLICFASIVFVYLRSYLNAHLGLKASNVFFSSFTTSIFNAPMLFFDSTPVGRILTRASSDLSILDFDMPHSILFALSVAIEILVIICIMVSVTWQVLIVAVPTMVASIFIQQYYQATAKELMRINGTTKAPVINFAAETSLGVVTVRSFNMVDRFFKNYLKLVDIDASLFFEAGATFFHSNVAMEWVVLRIEALQSLTVITAALFLILLPHGYVSPGLVGLSLSYAFILTAAQIFWTRWFSNLSNYIISVERINQFIHIAAEPPAIVEDNRPPSSWPSKGRIDVHGLEATLHLCLCVQLYFQYFHIIYVFVHWFQIRYRPSSPLVLKGITCTFQEGSRVGVVGRTGSGKSTLISALFRLVEPSTGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKALEKCHLKETIRRLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRIPTVIDSDMVMVLSYGKLMEYDEPSKLMDTNSSFSKLVAEYWSSCRKSSFPNIRSQKL* 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0560 1486 Gene3D - 1191 1468 IPR027417 -
Mal5g0560 1486 SUPERFAMILY ABC transporter transmembrane region 871 1189 IPR036640 GO:0005524|GO:0016021
Mal5g0560 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 815 IPR027417 -
Mal5g0560 1486 CDD ABC_6TM_ABCC_D2 882 1182 IPR044726 GO:0140359
Mal5g0560 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1236 1468 IPR003439 GO:0005524
Mal5g0560 1486 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1234 1467 IPR027417 -
Mal5g0560 1486 Pfam ABC transporter 610 744 IPR003439 GO:0005524
Mal5g0560 1486 Coils Coil 468 488 - -
Mal5g0560 1486 CDD ABCC_MRP_domain2 1239 1452 - -
Mal5g0560 1486 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 1235 1479 - -
Mal5g0560 1486 Gene3D ABC transporter type 1, transmembrane domain 264 579 IPR036640 GO:0005524|GO:0016021
Mal5g0560 1486 CDD ABC_6TM_ABCC_D1 278 566 IPR044746 GO:0140359
Mal5g0560 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 277 558 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0560 1486 ProSitePatterns ABC transporters family signature. 717 731 IPR017871 GO:0005524
Mal5g0560 1486 Gene3D ABC transporter type 1, transmembrane domain 848 1187 IPR036640 GO:0005524|GO:0016021
Mal5g0560 1486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 46 1212 - -
Mal5g0560 1486 Pfam ABC transporter transmembrane region 288 538 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0560 1486 Pfam ABC transporter transmembrane region 897 1156 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0560 1486 SUPERFAMILY ABC transporter transmembrane region 267 572 IPR036640 GO:0005524|GO:0016021
Mal5g0560 1486 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 594 815 IPR003439 GO:0005524
Mal5g0560 1486 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 888 1157 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0560 1486 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1235 1479 - -
Mal5g0560 1486 CDD ABCC_MRP_domain1 592 792 - -
Mal5g0560 1486 SMART AAA_5 1260 1445 IPR003593 -
Mal5g0560 1486 SMART AAA_5 619 792 IPR003593 -
Mal5g0560 1486 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 46 1212 - -
Mal5g0560 1486 Gene3D - 599 839 IPR027417 -
Mal5g0560 1486 Pfam ABC transporter 1251 1399 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0560 Mal-Chr5 8692342 8718284 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0560 608 943 Calmodulin-binding Proteins AT2G36910 25.000 7.62e-19 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0560 - - gmx:100784827 2185.22