Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0559 ATGGAAATGGAAAAGGAAATGTCAATCAAACATACTGGAACTCATGGTGTCCCAGAATGTTTATCTGAGTCTGAGCCACTGATAGATCAGAAAGTTGAAACAAAACAAACAGGACTAGGTCATGCTACCTTTTTCAGCAAGTTGTTTTTCTCTTGGGGTAATTCTTTACTAAGTTTAGGTTACTCAAAGCCTCTAGCTCTTGAAGACATACCTTCCCTTGTATCGGAAGATGAAGCAAACATAGCCTATCAAAGATTTGTTCATTCTTGGGAATCACTTATTAGAGAGAGGACTAAAAACAATACAAAGAGTTTGATTCTTTGGTCTATAGTTAGAACTTTCTTAAGAGAAAACATATTAATAGCATTTTTTGCATTTCTCAGAACTATTTCTGTTGTAGTTTCACCTCTAATACTCTTTGCTTTTGTTAACTACTCAAATAGAACTGAGGCAGATCTTAAACAAGGTCTTTCCATAGTTGGTTTTTTGATTCTCACCAAATTGGTTGAATCTTTGTCACAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGAATGAAAATGAGATCAGCTTTGATGGTGGCGGTTTATCGAAAGCAACTAAAGCTTTCAAGCTCGGCTAGGACAAGACACTCAACCGGCGAAATTTTGAATTACATTGCAATTGATGCATATAGAATGGGAGAATTTCCATGGTGGTTTCATATAACATGGACTTGTGCACTGCAGCTTGTTTTGTCCATTGCTATTCTTTTCGGTGTTGTTGGTATTGGTGCTCTTCCTGGTTTAGTGCCTCTTCTCATCTGTGGACTTCTCAATGTACCACTTGCAAGGATTTTACAAAATTGTCAGGTACAATTTATGTTTGCACAGGATGAACGTCTTAGATCAACTTCAGAGATTCTAAATAGTATGAAAATAATTAAGTTACAATCTTGGGAAGAAAAATTCAAGAACATACTTGAGTCCCTACGAGAAAAAGAATTCAAATGGCTGTCTAAGATACAGTTCTTGAAAGCTTTCGGAACATTTCTTTATTGGCTGTCTCCTACAGTTCTTCCTGCCGTTGTCTTCCTCGGGTGCACATTTTTCAATAGTGCACCGTTGAATGCTGAAACCATTTTTACAGTTCTTGCAACGTTAAGGAACATGGGAGATCCTGTTCTTATGATACCAGAGGCTCTATCTATTATGATTCAAGTTAAGGTTTCCTTTGATCGTCTCAACACATTTATGCTTGATGAAGAGCTAAGTAATGATGATAATGGAAGAAACACAAAGCAATGTTCAGTCAATGCTCTGGTAATTGAAGCTGGCAACTTCATTTGGGATCATGAATCTGTGTCCTCAACTTTAAAAGATGTGAATTTAGAGGTAAAATGGGGACAGAAAATAGCAGTTTGTGGACCAGTTGGAGCTGGAAAATCATCTCTTCTGTATTCAATATTAGGAGAGATTCCAAAGATTTCAGGAACTGTTAATGTAGGTAGCACACTAGCCTATGTTTCTCAATCTTCTTGGATACAAAGTGGAACTGTTCGAGATAATATACTCTTCGGCAAGCCAATGGACAAAGAAAAATATTGGAATGCCATTAAATTATGTGCCTTAGATAAGGATATAGATGATTTTAGCTATGGTGATCTTACAGAAATAGGTCAGAGAGGAATTAATATAAGTGGAGGACAGAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAACGATGCTGATATCTTTCTCCTCGATGATCCTTTCAGTGCAGTTGATGCGCACACAGCTGCTATTCTGTTCAATGACTGCGTAATGACAGCTCTAAGAGATAAAACAGTCATTTTAGTGACGCATCAAGTGGAGTTTCTCTCAGAAGTTGATACTATCTTGGTAATGGAGGATGGAAAAGTTATTCAATCAGGCAGTTATCAAAATCTCCTGGAAGCTGGGACAGCCTTTGAACAACTTGTGAACGCCCATAAAGAAGCACTTACCGAGCTAAATCAAGATAATGAAAATAAAGGAGTTTCTGAAAACGATGATTTGGTTAATCCACAAGACTCTTGTTTTTATCTCGCTAAAATTCAGAACGAGGGGGAGATTTCTAACAAGGGTCAACTAACAGAAGATGAAGAAAAAGAGTTTGGAGATGTTGGCTGGAAGCCATTATGGAATTATATTTCTTATTCCAAGGGATCATTCTTGCTGTGTTTTATCGTGTTAGCTCAATCTGCATTTCTGGTTTTGCAGACTGCATCCTCATTTTGGCTTGCTATTGCCATTGAAATTCCAAAAGTAACTAGTGCCACCCTTATTGGAGTTTATTCATTGATTTCCTTTTCTAGCATTGTATTTGTATATTTAAGGTCTTACTTAAATGCACATCTCGGATTAAAAGCTTCTACTGCCTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTATTCTTTGATTCGACCCCTGTAGGAAGGATTTTAACCCGAGCTTCATCAGATTTAAATATTTTGGACTTTGATATGCCTCATTCCATCCTCTTTGCATTATCTGTAGCAATTGAAATTCTGGTAATAATTTGCATAATGGTTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTACAATGGTGGCATCAATATTCATTCAGCAATATTATCAAGCAACTGCAAGGGAACTAATGCGGATCAATGGAACCACCAAAGCTCCAGTCATGAATTTTGCAGCGGAGACATCACTTGGAGTGGTTACTGTAAGAGCATTCAACATGGTAGAAAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCTAATATGGCCATGGAATGGGTAGTTTTAAGGATTGAAGCACTTCAAATTTTAACTGTCATCACTGCAGCTTTGTTGCTCATTCTACTTCCTCATGGATATGTGTCCCCAGGACTTGTGGGACTATCTCTTTATTATGCTTTTATTTTGACAACAGCCCAAATATTTTGGACTCGATGGTTTTCCAACTTATCAAACTACATTATCTCTGTTGAAAGAATCAATCAATTCATTCACATTCCAGCCGAGCCTCCTGCCATAGTGGAGGATAACCGATCACCGTCTTCATGGCCTTCTAAGGGTAGGATTGATGTTCAAGGCTTAGAGATTAGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTTCAAGAAGGGAGTAGGGTTGGAATTGTTGGAAGGACTGGAAGTGGAAAAAGTACACTTATAAGTGCTTTGTTTCGCTTAGTTGAGCCATCAAGAGGTGATATTCTCATAGATGGGATTAACATTTGCTCAATCGGGTTGAAGGATTTGAGAACAAAGCTAAGCATCATTCCTCAAGAACCAACACTTTTCAAGGGCAGCATTAGGACTAACCTTGACCCTCTAGGCCTCTACTCAGATGATGAAATATGGAAGGCTGTAGAGAAATGTCAGCTTAAGGAAACAATCAGCAAGCTACCAAGTCTCTTGGACTCTTCTGTAAGTGATGAAGGTGGAAATTGGAGTTTGGGACAAAGGCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTAGTTTTGGATGAAGCTACAGCCTCCATTGACTCTGCTACAGATGCCATTCTACAAAGAGTAATTAGACAAGAGTTTGCGGAATGCACTGTTATAACTGTTGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTTATGGTCTTATCTTATGGGAAACTAGTGGAATATGATGAACCTTCAAAGCTAATGGATACCAACTCTTCATTCTCTAAGCTAGTAGCTGAATATTGA 3852 0.3801 MEMEKEMSIKHTGTHGVPECLSESEPLIDQKVETKQTGLGHATFFSKLFFSWGNSLLSLGYSKPLALEDIPSLVSEDEANIAYQRFVHSWESLIRERTKNNTKSLILWSIVRTFLRENILIAFFAFLRTISVVVSPLILFAFVNYSNRTEADLKQGLSIVGFLILTKLVESLSQRHWFFNSRRSGMKMRSALMVAVYRKQLKLSSSARTRHSTGEILNYIAIDAYRMGEFPWWFHITWTCALQLVLSIAILFGVVGIGALPGLVPLLICGLLNVPLARILQNCQVQFMFAQDERLRSTSEILNSMKIIKLQSWEEKFKNILESLREKEFKWLSKIQFLKAFGTFLYWLSPTVLPAVVFLGCTFFNSAPLNAETIFTVLATLRNMGDPVLMIPEALSIMIQVKVSFDRLNTFMLDEELSNDDNGRNTKQCSVNALVIEAGNFIWDHESVSSTLKDVNLEVKWGQKIAVCGPVGAGKSSLLYSILGEIPKISGTVNVGSTLAYVSQSSWIQSGTVRDNILFGKPMDKEKYWNAIKLCALDKDIDDFSYGDLTEIGQRGINISGGQKQRIQLARAVYNDADIFLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILVTHQVEFLSEVDTILVMEDGKVIQSGSYQNLLEAGTAFEQLVNAHKEALTELNQDNENKGVSENDDLVNPQDSCFYLAKIQNEGEISNKGQLTEDEEKEFGDVGWKPLWNYISYSKGSFLLCFIVLAQSAFLVLQTASSFWLAIAIEIPKVTSATLIGVYSLISFSSIVFVYLRSYLNAHLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDLNILDFDMPHSILFALSVAIEILVIICIMVSVTWQVLIVAVPTMVASIFIQQYYQATARELMRINGTTKAPVMNFAAETSLGVVTVRAFNMVERFFKNYLKLVDTDASLFFHSNMAMEWVVLRIEALQILTVITAALLLILLPHGYVSPGLVGLSLYYAFILTTAQIFWTRWFSNLSNYIISVERINQFIHIPAEPPAIVEDNRSPSSWPSKGRIDVQGLEIRYRPNAPLVLKGITCTFQEGSRVGIVGRTGSGKSTLISALFRLVEPSRGDILIDGINICSIGLKDLRTKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETISKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKLVEYDEPSKLMDTNSSFSKLVAEY* 1284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0559 1283 Pfam ABC transporter 452 586 IPR003439 GO:0005524
Mal5g0559 1283 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g0559 1283 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 38 1281 - -
Mal5g0559 1283 SMART AAA_5 1074 1266 IPR003593 -
Mal5g0559 1283 SMART AAA_5 461 634 IPR003593 -
Mal5g0559 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1050 1282 IPR003439 GO:0005524
Mal5g0559 1283 CDD ABC_6TM_ABCC_D2 730 1023 IPR044726 GO:0140359
Mal5g0559 1283 Gene3D - 1031 1281 IPR027417 -
Mal5g0559 1283 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 38 1281 - -
Mal5g0559 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 435 657 IPR027417 -
Mal5g0559 1283 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 436 657 IPR003439 GO:0005524
Mal5g0559 1283 Pfam ABC transporter 1065 1213 IPR003439 GO:0005524
Mal5g0559 1283 Pfam ABC transporter transmembrane region 119 380 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0559 1283 Pfam ABC transporter transmembrane region 747 997 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0559 1283 CDD ABC_6TM_ABCC_D1 120 408 IPR044746 GO:0140359
Mal5g0559 1283 CDD ABCC_MRP_domain2 1046 1266 - -
Mal5g0559 1283 Gene3D ABC transporter type 1, transmembrane domain 697 1029 IPR036640 GO:0005524|GO:0016021
Mal5g0559 1283 Gene3D ABC transporter type 1, transmembrane domain 94 416 IPR036640 GO:0005524|GO:0016021
Mal5g0559 1283 CDD ABCC_MRP_domain1 434 634 - -
Mal5g0559 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 119 400 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0559 1283 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1038 1280 IPR027417 -
Mal5g0559 1283 Gene3D - 442 684 IPR027417 -
Mal5g0559 1283 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 736 998 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0559 1283 SUPERFAMILY ABC transporter transmembrane region 107 414 IPR036640 GO:0005524|GO:0016021
Mal5g0559 1283 ProSitePatterns ABC transporters family signature. 559 573 IPR017871 GO:0005524
Mal5g0559 1283 SUPERFAMILY ABC transporter transmembrane region 719 1030 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0559 Mal-Chr5 8681245 8686553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0559 452 677 Calmodulin-binding Proteins AT2G36910 26.016 8.09e-18 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0559 - - gmx:100784827 2014.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0559 5 8681245 8686553 Mal5g0559 5 8681245 8686553 ECH