Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0553 ATGACTCACTTTGAGAATGAGAGCACAAGAGGTGAAATTTCTGAGCCACTGCTAGCTCAGAAATTTGAAAAAAAACAAACAGGACTTGGCCATGCATCATTTCTCAGCAAGTTGGTTTTCTCTTGGGTTAATTCTTTAATCAGTTTAGGTTACTCAAAGCCACTAGATCTTGAAGATATACCTTCCCTTGTTTCTGAAGATGATGCAAATATGGCTTATCAAAATTTTGTTCATGCTTGGGAATCACTTGTTAGAGAGAGAACCAAGAACAATACAAAGAATTTGGTTCTTTGGTCAATAGTAAGAACTTACTTAAAAGAAAACATATTAATAGCATTTTATGGATTACTCAGAACTATTTCTGTTGTAGCTTCACCTCTAATACTTTATGCTTTTGTTAACTACTCAAAAAGAACTGAGGCAGATCTCAAACAAGGTTTTACCATAGTTGGTTTTCTGATTATCACCAAATTGGTTGAGTCCTTGTCTCAAAGACATTGGTTTTTTAACTCAAGGAGATCAGGAATGAAAATGAGATCAGCTCTCATGGTGGCGGTTTATCAAAAGCAACTAAAGCTTTCTAGCTCGGCAAAGAGAAGACACTCGGCCGGTGAAATTGTAAATTACATTGCAGTTGATGCATATCGAATGGGAGAATTTCCATGGTGGTTTCATTTAACATGGACTTCTGCAGTGCAACTTGTTCTTTCCGTTGGTGTCCTTTTTGGTGTTGTTGGTATTGGTGCTCTCCCTGGTTTAGTCCCTCTTCTTATATGTGGACTTCTAAATATACCATTTGCAAGGATCCTACAAAATTGTCAGTCACAGTTTATGATTGCACAGGACGAGCGTCTTCGATCAACTTCGGAGATTCTAAATAGTATGAAGATCATTAAGTTACAATCATGGGAAGAAAAATTCAAGAACTTAGTCGAGTCGCTGCGTGATAAAGAGTTTATATGGTTGTCTAAGGCACAGCTAAGTAAAGCGGCAGGAACATTTCTTTATTGGATGTCTCCTACAATGATTTCTGCTGTTGTTTTCCTTGGATGTGCTGTTACCAAGAGTGCACCATTGAATGCTGGAACCATTTTCACAATTCTTGCAACATTGAGGAACATGGGAGAACCTGTTAGAATGATCCCTGAAGCTCTATCCATTATGATTCAAGTTAAGGTTTCGTTTGATCGTCTTAATAACTTTTTGCTTGATGAAGAGCTAAACAATAGCGATAGTGAAAAAAACTTAAAGCAATGTTCGGTTAATGCTGTGGAGATTCAAGCTGGCAACTTCATTTGGGATCATGAATCTGTGTCTCCAACTTTAGCAGATGTGAATTTAGAAATCAAATGGGGACAGAAAATAGCAGTTTGTGGACCAATTGGAGCTGGAAAATCATCACTTCTGTATGCAATACTTGGAGAGATTCCTAAGATTTCAGGAACTGTGAATGTAGGTGGAACTTTTGCCTATGTTTCTCAATCTTCATGGATACAAAGTGGAACAGTTCAAGACAATATACTCTTTGGCAAGCCAATGGACAAAACAAGATATGAGAAAGCAATTAAAGCATGTGCCTTAGATAAAGATATCAATGATTTTAGCCATGGTGATCTTACAGAAATAGGTCAGAGAGGAATCAACATGAGTGGAGGACAAAAGCAAAGGATTCAACTAGCTAGAGCAGTCTACAATGATGCTGATATCTATCTCCTTGACGATCCTTTCAGTGCAGTTGATGCGCATACAGCTGCAATACTATTCAATGACTGTGTCATGACTGCTCTAAGAGACAAAACAGTCATTCTAGTTACTCATCAAGTGGAATTTCTCTCTGAAGTTGATACTATCTTGGTAGTGGAGGGTGGAAAAGTTATTCAATCAGGTAGTTATGAAAATCTCCTGACAGCTGGAACAGCCTTTGAACTACTTGTGAGTGCACATAAGGACACAATTACTGAGTTTAATCAAGATCATGAAAATAAAGGAAGTTCTGAAAATGAGGTTTTGGCTAATCCTCAAGACTCTCATGGTTTTAATCTCACTAAAAATCAAAGTGAGGGAGAGATTTCTAGTATCAAGGGTCCAACTGGTGCACAGCTTACCCAAGAAGAAGAAAAAGTGATTGGAAATGTTGGATGGAAGCCATTTTGGGATTATATTAGTTATTCCAAAGGGTCATTCATGCTGTGTTTGATCATCTTAACACAATCTATTTTTTTGGCTTTGCAGACTTCATCAACCTTTTGGCTTGCTATAGCCCCTGAAATTCCAAAAGTAACCAATACCACCTTGATTGGAGTTTATACATTAGTTGCTTTTTTCGGTGTTTTGTTCGTTTATATAAGGTCTTACTTTACTGCACTTTTGGGATTAAAAGCTTCTACTGCTTTCTTCTCAAGCTTCACTACAGCTATCTTCAATGCTCCAATGCTTTTCTTTGATTCAACCCCTGTAGGAAGGATTTTAACTAGGGCTTCATCAGATTTCAGTATTTTGGACTTTGATATACCTTCTTCCATCACATTTGTAGCATCAGTAGGAATTGAAATTATTGTGATAATTTGTGTAATGGCTTCAGTCACATGGCAAGTTCTCATTGTTGCTGTTCCTGCAATGGTTGCATCAGTATTCATTCAGCAATATTATCAAGCCACTGCAAGGGAACTAATCAGGATCAATGGAACCACCAAAGCTCCAGTAATGAACTATGCAGCTGAGACATCACTTGGCGTGGTTACTGTAAGAGCATTCAACATGGCAGACAGATTTTTCAAAAACTACTTAAAACTTGTGGACACAGATGCTTCATTGTTCTTTCATTCTAATGTGACAATGGAATGGGTGGTTTTAAGGATTGAAGTACTTCAAAGTTTGACTGTCATCACTGCAGCTTTACTGCTTATTCTACTTCCTCAAGGATATGTATCACCAGGCCTTGTGGGATTGTCTCTTTCCTATGCTTTTACCTTGACAGCAGCCCAAATATTTTGGAGTAGATGGTTTTCCAATTTATCAAATTTTATTATCTCTGTTGAAAGAATCAAGCAATTCATTCACATACCAGCTGAACCTCCTGCCATTGTGGATGATAACCGACCGCCATCTTCATGGCCTTCCAAGGGCAAGATTAGTCTTCAAGGCTTAGAGATTCGATATCGTCCTAATGCTCCATTAGTCCTTAAGGGAATCACTTGTACATTCAAAGAAGGGAGTAGGGTAGGAGTTGTTGGAAGGACTGGAAGTGGAAAAAGTACATTGATTAGTGCTTTGTTTCGCTTGGTTGAGCCTTCAAGAGGAAATATTCTTATCGATGGGATGAACATTTGTTCAATGGGATTGAAGGATGTGAGAATGAAGCTAAGCATAATCCCCCAAGAACCAACTCTTTTCAAAGGTAGCATTAGAACAAACTTGGATCCTCTAGGCCTGTATTCAGATGATGAAATATGGAAGGCTGTAGAGAAATGTCAGCTCAAGGAAACAATCAGGAAGCTACCAAGTCTCTTGGACTCTTCAGTGAGTGATGAAGGTGGAAATTGGAGCTTGGGACAAAGGCAATTGTTTTGTCTTGGAAGAGTTCTACTTAAGAGAAACAGAATTCTAGTTTTGGATGAAGCTACAGCCTCCATTGACTCTGCTACAGATGCCATTCTACAAAGAGTAATTAGACAAGAATTTGCAGAATGCACAGTTATAACCGTTGCTCACAGAGTTCCAACTGTAATAGACAGTGACATGGTCATGGTCCTATCTTATGGAAAAATGGTGGAATACGATGAGCCTTCAAAGCTAATGGACACCAACTCTTCATTCTCTAAGATGGTAGCTGAATATTGGTCCAGTTGCAAGAAGAACTCCTCCCAAACAGTAGCAGGAAGATAA 3885 0.3846 MTHFENESTRGEISEPLLAQKFEKKQTGLGHASFLSKLVFSWVNSLISLGYSKPLDLEDIPSLVSEDDANMAYQNFVHAWESLVRERTKNNTKNLVLWSIVRTYLKENILIAFYGLLRTISVVASPLILYAFVNYSKRTEADLKQGFTIVGFLIITKLVESLSQRHWFFNSRRSGMKMRSALMVAVYQKQLKLSSSAKRRHSAGEIVNYIAVDAYRMGEFPWWFHLTWTSAVQLVLSVGVLFGVVGIGALPGLVPLLICGLLNIPFARILQNCQSQFMIAQDERLRSTSEILNSMKIIKLQSWEEKFKNLVESLRDKEFIWLSKAQLSKAAGTFLYWMSPTMISAVVFLGCAVTKSAPLNAGTIFTILATLRNMGEPVRMIPEALSIMIQVKVSFDRLNNFLLDEELNNSDSEKNLKQCSVNAVEIQAGNFIWDHESVSPTLADVNLEIKWGQKIAVCGPIGAGKSSLLYAILGEIPKISGTVNVGGTFAYVSQSSWIQSGTVQDNILFGKPMDKTRYEKAIKACALDKDINDFSHGDLTEIGQRGINMSGGQKQRIQLARAVYNDADIYLLDDPFSAVDAHTAAILFNDCVMTALRDKTVILVTHQVEFLSEVDTILVVEGGKVIQSGSYENLLTAGTAFELLVSAHKDTITEFNQDHENKGSSENEVLANPQDSHGFNLTKNQSEGEISSIKGPTGAQLTQEEEKVIGNVGWKPFWDYISYSKGSFMLCLIILTQSIFLALQTSSTFWLAIAPEIPKVTNTTLIGVYTLVAFFGVLFVYIRSYFTALLGLKASTAFFSSFTTAIFNAPMLFFDSTPVGRILTRASSDFSILDFDIPSSITFVASVGIEIIVIICVMASVTWQVLIVAVPAMVASVFIQQYYQATARELIRINGTTKAPVMNYAAETSLGVVTVRAFNMADRFFKNYLKLVDTDASLFFHSNVTMEWVVLRIEVLQSLTVITAALLLILLPQGYVSPGLVGLSLSYAFTLTAAQIFWSRWFSNLSNFIISVERIKQFIHIPAEPPAIVDDNRPPSSWPSKGKISLQGLEIRYRPNAPLVLKGITCTFKEGSRVGVVGRTGSGKSTLISALFRLVEPSRGNILIDGMNICSMGLKDVRMKLSIIPQEPTLFKGSIRTNLDPLGLYSDDEIWKAVEKCQLKETIRKLPSLLDSSVSDEGGNWSLGQRQLFCLGRVLLKRNRILVLDEATASIDSATDAILQRVIRQEFAECTVITVAHRVPTVIDSDMVMVLSYGKMVEYDEPSKLMDTNSSFSKMVAEYWSSCKKNSSQTVAGR* 1295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0553 1294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 426 647 IPR003439 GO:0005524
Mal5g0553 1294 Gene3D - 1027 1278 IPR027417 -
Mal5g0553 1294 Pfam ABC transporter transmembrane region 763 993 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0553 1294 Pfam ABC transporter transmembrane region 131 369 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0553 1294 Gene3D - 431 674 IPR027417 -
Mal5g0553 1294 CDD ABC_6TM_ABCC_D1 110 398 IPR044746 GO:0140359
Mal5g0553 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 423 644 IPR027417 -
Mal5g0553 1294 Pfam ABC transporter 442 576 IPR003439 GO:0005524
Mal5g0553 1294 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 109 390 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0553 1294 CDD ABC_6TM_ABCC_D2 726 1019 IPR044726 GO:0140359
Mal5g0553 1294 SUPERFAMILY ABC transporter transmembrane region 715 1026 IPR036640 GO:0005524|GO:0016021
Mal5g0553 1294 CDD ABCC_MRP_domain1 424 624 - -
Mal5g0553 1294 Pfam ABC transporter 1061 1209 IPR003439 GO:0005524
Mal5g0553 1294 CDD ABCC_MRP_domain2 1042 1262 - -
Mal5g0553 1294 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1046 1278 IPR003439 GO:0005524
Mal5g0553 1294 SMART AAA_5 1070 1255 IPR003593 -
Mal5g0553 1294 SMART AAA_5 451 624 IPR003593 -
Mal5g0553 1294 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 728 994 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal5g0553 1294 ProSitePatterns ABC transporters family signature. 549 563 IPR017871 GO:0005524
Mal5g0553 1294 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 9 1286 - -
Mal5g0553 1294 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1034 1277 IPR027417 -
Mal5g0553 1294 PANTHER NHPM BACTERIOCIN SYSTEM ABC TRANSPORTER, PEPTIDASE/ATP-BINDING PROTEIN-RELATED 9 1286 - -
Mal5g0553 1294 Gene3D ABC transporter type 1, transmembrane domain 694 1025 IPR036640 GO:0005524|GO:0016021
Mal5g0553 1294 Gene3D ABC transporter type 1, transmembrane domain 84 406 IPR036640 GO:0005524|GO:0016021
Mal5g0553 1294 SUPERFAMILY ABC transporter transmembrane region 97 398 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0553 Mal-Chr5 8585002 8592195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0553 411 689 Calmodulin-binding Proteins AT2G36910 25.667 6.76e-20 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0553 - - gmx:100784827 2055.41