Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0524 ATGGATGGTCTAAATTGGGATGGCTCACAACTTCTAGAGAACACACCAATCTTGTGGAATACTCAACACTTTGAAGAAGGCTACAACATTTCAAACTCTCTTACTCATCATATACAAGAGATGCATAAAGTTCAAATTGGTAACACATATTCAAATTCTGAAAGAGGGATGCCAAACACAAATCTTTCACAGCATGCAACAAACATGAAAGTGAATTCAAAAGCTGGATCCAGCTGGAGAGAAGAACCTTTAATACCTCAATCATTTCAGTCCCTTTCAGACAGTAGACCTTACAACATTATGCCAGATTTCAACATGGCCCACCAACAACAAAAACTCAACAACTCTTTTGAGTCTTTTGATTGTTTGCTTTCAGCTACTAACAGTAACACAGACACTTCTGTTGAAAATGATAATGATGGAATTTCAAAGCTATTTTCTGACTGCAAAAACTTATGGAACTTCAGTTATGTCAGTAGCACAACAACTTCCTCAGGTGAAAATGATAGTAATGTTTCAAACAGTACAAGCTACGAAGCACTGACACAAAAACGGATGCGGACACCAGACACGCCTTCAATCAGAAGTGTCAGTGCTATAGAGGGTACTGGAAACAAAAACATTCAGGGTCCACTCAATGAATTTGATGAAACAATCTCTCATCCAAGAAAAGAAATACAATCAAGTACTATTCATAATTCTTCACCTGTTGAAGGTGGTTTTAGACTTATCACTGATAAACCACCAAAATGCAAGAAACCAAGATGTGATAAGGGACCTTGTTCAACTAATATTAATTTTCAACAACCAAATTCATCATCAATGTGTTGTTCTTCTTCAATTGAAGAACCTGATCCAGAAGCAATAGCACAAATGAAGGAAATGATGTATAGAGCTGCAGCATTTAGGCCAGTGAATTTTGGAATGGATGATATTGATGTAACTGAAAAAAAGCCTAAGAGGAAGAACGTTAAGATATCAAATGATCCACAAACTGTGGCTGCAAGGCATAGAAGGGAGAGAATAAGTGATAGGATTAGGGTTTTGCAAAAGATTGTACCTGGTGGAAGCAAAATGGACACTGCTTCAATGCTTGATGAGGCTGCAAATTATCTCAAGTTTTTAAGGTCACAAGTTAAGGCACTTGAAAGTTTAGGTAACAAAGTTAATGCTATGGATTGTAATCCAACTAGTATTGCTTTCTCTTTTAACCCTTCTTTTCCCATGCAAATGATCCCTAGTAGTCAAAATCCTCATTCACAGGGTTGA 1269 0.3704 MDGLNWDGSQLLENTPILWNTQHFEEGYNISNSLTHHIQEMHKVQIGNTYSNSERGMPNTNLSQHATNMKVNSKAGSSWREEPLIPQSFQSLSDSRPYNIMPDFNMAHQQQKLNNSFESFDCLLSATNSNTDTSVENDNDGISKLFSDCKNLWNFSYVSSTTTSSGENDSNVSNSTSYEALTQKRMRTPDTPSIRSVSAIEGTGNKNIQGPLNEFDETISHPRKEIQSSTIHNSSPVEGGFRLITDKPPKCKKPRCDKGPCSTNINFQQPNSSSMCCSSSIEEPDPEAIAQMKEMMYRAAAFRPVNFGMDDIDVTEKKPKRKNVKISNDPQTVAARHRRERISDRIRVLQKIVPGGSKMDTASMLDEAANYLKFLRSQVKALESLGNKVNAMDCNPTSIAFSFNPSFPMQMIPSSQNPHSQG* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0524 422 Gene3D - 331 393 IPR036638 GO:0046983
Mal5g0524 422 Coils Coil 365 385 - -
Mal5g0524 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 332 385 IPR036638 GO:0046983
Mal5g0524 422 Pfam Helix-loop-helix DNA-binding domain 336 375 IPR011598 GO:0046983
Mal5g0524 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 375 IPR011598 GO:0046983
Mal5g0524 422 SMART finulus 332 381 IPR011598 GO:0046983
Mal5g0524 422 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 420 IPR045843 GO:0003700|GO:0006355
Mal5g0524 422 PANTHER TRANSCRIPTION FACTOR BHLH87 1 420 - -
Mal5g0524 422 CDD bHLH_AtIND_like 327 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0524 Mal-Chr5 8135814 8137082 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0524 108 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 49.367 9.41e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g0524 HLH 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0524 - - vra:106773034 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0524 5 8135814 8137082 Mal5g0524 5 8135814 8137082 ECH