LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0437	ATGGAAGGTTCGCCAAAGAACGGAGAGGCAGAGAAGTCATTGATGGAAGACCTGCTCGGACTTTTAAGGATTCGCATCAAGCGCGGCGTTAACCTCGCCGTTCGTGATGTTAATACTAGTGATCCATATGTCGTCGTTAAGATGGGAAAGCAGAGACTCAAGACTCATGTCGTTAAAAAGGATATCAATCCTGAGTGGAATGAAGACCTTACACTGCCTATTACAGATCCCGTTCTTCCATTGAAATTGACTGTGTATGACTATGACACATTTAGCAAAGATGACAAAATGGGAGATGCTGAATTTGACCTATTGCCATATATAGAAGCCTTAAAGATGAACTTAGAAGACCGCCCCAGTGGTACTATAGTCACCAGAATACAACCGTGCAGACAAAACTGCTTGGCGGAGGAGAGCTGCATCACTTATACCAATGGCAAAGTTGTCCAAGATGTTGTCCTTAGATTGAGAAATGTCGAATGTGGTGAAGTGGAAATTCAATTGCAATGGATTGATCTTCCTGGTTCCAAGGGTTTATAA	540	0.4278	MEGSPKNGEAEKSLMEDLLGLLRIRIKRGVNLAVRDVNTSDPYVVVKMGKQRLKTHVVKKDINPEWNEDLTLPITDPVLPLKLTVYDYDTFSKDDKMGDAEFDLLPYIEALKMNLEDRPSGTIVTRIQPCRQNCLAEESCITYTNGKVVQDVVLRLRNVECGEVEIQLQWIDLPGSKGL*	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal5g0437	179	CDD	C2_ArfGAP	19	162	-	-
	Mal5g0437	179	Gene3D	C2 domain	6	130	IPR035892	-
	Mal5g0437	179	PANTHER	PROTEIN C2-DOMAIN ABA-RELATED 4	10	178	IPR044562	-
	Mal5g0437	179	SMART	C2_3c	21	116	IPR000008	-
	Mal5g0437	179	Pfam	C2 domain	20	105	IPR000008	-
	Mal5g0437	179	ProSiteProfiles	C2 domain profile.	6	117	IPR000008	-
	Mal5g0437	179	PRINTS	C2 domain signature	60	73	IPR000008	-
	Mal5g0437	179	PRINTS	C2 domain signature	36	48	IPR000008	-
	Mal5g0437	179	PRINTS	C2 domain signature	81	89	IPR000008	-
	Mal5g0437	179	PANTHER	PROTEIN C2-DOMAIN ABA-RELATED 4-LIKE	10	178	-	-
	Mal5g0437	179	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	18	105	IPR035892	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g0437	Mal-Chr5	6393837	6394925	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g0437	52	179	C2H2 Transcription Factor Family	AT1G70790	56.923	5.18e-50	156

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0437	-		-	rcu:8283127	291.582