Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0416 ATGGACTCAACAACTTCCTTTGATCTAGCTCTAGCTCCATCCACCGTCCCCTTCACCCTTGAACAACCCAACTACACTCACCACGTGTCAGTACTCCCTGCCACCACCACCCATCCTCCTTATGCTGAGATGATATACAAAGCAATAGAAGCACTAAAAGAGAAAGATGGATCAAGCAAAAGAGCAATAGGAAAGTACATAGAACAAGTGTACAAAGAAGTTCTTCCACCAGAACACACCACTTTATTAACACAACACCTCAACCACTTGAAATCTGCTGGTCTTCTCATCATGTTCAAAAAATCTTACAAACTTCCATCATCACTCCCTCCACCTCCAACTCTCACTGGATCTGACCACTCTCAATCTCATCTCCCTTTCACTCCACTAACCCAAAGAGGACGTGGTCGTCCTCCTAAGCCCAAGCCCAAGCCCAAGCCCGTCTTCGTTTCTCTAGTTGTACCTCCTACAACTACAACTGATGTGCTGCCTCAAAGTCAAAGAAGAGGGCGTGGACGTCCGCCTGGGACTTTCAGATCTAAGTCTATAAAGAGGCCCGGTCGTCCTCCCAAGCCCAAATCTGTATCGAATGGGCTCAAACGACGTCCGGGCCGTCCACCTAAAATCCAGTCGCAACCAACAGTCATACCTTTTGCTGCTGTTCCAGAAGAATCTGTTAGATCTACCAGGCCCAGAGGCCGGCCCAAGAAGTATGCAGATGCGCTGGTGCCAGGTTCTACCACCGTCACCAAGAAGCTTGCTGTCAATTCCACAGGAAGACCCGTTGGTCGCCCAAAGGGAGCAAAAGGTGTAAAAAAGTTTGGTGATGAAGATCTAAGGATGAAACTTGAGCACTTTCAATCAAAGGTGAAGGAATCACTTGATGTGCTTAAGCCTTATTTTGATCATCAAAGTCCAGCCACTGCAGTTGCAGCAATCCAAGAGTTAGAAATGCTGGCAACTTTGGACCTTAAAGCACCATTAAGAGATGAAACACACCAACTGCAGCAATTTCCAGAACAGCCACCACCGCAACAAGAGCTACCACCTCAGCAACTGCATTTCCAGCAAGTGCCGCAGGCGCAGATTTATGAACAACAATATCTCCAGATGCCATTGCAGCAACAACAGGTGCAGCAACATTTTCAGCCACATACTTTCGCGCCGAGCTAG 1173 0.4766 MDSTTSFDLALAPSTVPFTLEQPNYTHHVSVLPATTTHPPYAEMIYKAIEALKEKDGSSKRAIGKYIEQVYKEVLPPEHTTLLTQHLNHLKSAGLLIMFKKSYKLPSSLPPPPTLTGSDHSQSHLPFTPLTQRGRGRPPKPKPKPKPVFVSLVVPPTTTTDVLPQSQRRGRGRPPGTFRSKSIKRPGRPPKPKSVSNGLKRRPGRPPKIQSQPTVIPFAAVPEESVRSTRPRGRPKKYADALVPGSTTVTKKLAVNSTGRPVGRPKGAKGVKKFGDEDLRMKLEHFQSKVKESLDVLKPYFDHQSPATAVAAIQELEMLATLDLKAPLRDETHQLQQFPEQPPPQQELPPQQLHFQQVPQAQIYEQQYLQMPLQQQQVQQHFQPHTFAPS* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0416 390 MobiDBLite consensus disorder prediction 114 129 - -
Mal5g0416 390 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g0416 390 PRINTS AT-hook-like domain signature 132 142 IPR017956 GO:0003677
Mal5g0416 390 PRINTS AT-hook-like domain signature 166 177 IPR017956 GO:0003677
Mal5g0416 390 PRINTS AT-hook-like domain signature 227 237 IPR017956 GO:0003677
Mal5g0416 390 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g0416 390 Gene3D - 34 113 IPR036388 -
Mal5g0416 390 SUPERFAMILY "Winged helix" DNA-binding domain 35 112 IPR036390 -
Mal5g0416 390 PANTHER HISTONE H1-LIKE 14 334 - -
Mal5g0416 390 MobiDBLite consensus disorder prediction 108 216 - -
Mal5g0416 390 CDD H15 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g0416 390 PANTHER HISTONE H1 14 334 - -
Mal5g0416 390 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Mal5g0416 390 SMART AT_hook_2 259 271 IPR017956 GO:0003677
Mal5g0416 390 SMART AT_hook_2 132 144 IPR017956 GO:0003677
Mal5g0416 390 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Mal5g0416 390 SMART AT_hook_2 200 212 IPR017956 GO:0003677
Mal5g0416 390 SMART AT_hook_2 183 195 IPR017956 GO:0003677
Mal5g0416 390 SMART AT_hook_2 229 241 IPR017956 GO:0003677
Mal5g0416 390 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal5g0416 390 PRINTS Histone H5 signature 182 201 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Mal5g0416 390 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0416 Mal-Chr5 6207887 6209771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0416 44 110 Single Myb Histone (SMH) Gene Family AT1G49950 41.791 2.48e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0416 - - mtr:MTR_8g106980 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0416 5 6207887 6209771 Mal5g0416 5 6207887 6209771 ECH