Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0399 ATGGATATTGAGGAGGATATTCGTTCTTTACAGCTTGACTCAGCAGAAGACATTAATGGGGTGGTAAATCCAGAGGATGAAAAGCCGGATGTTGATAAGATGGATGAAGGTTTGTTGTCGGGAAGTGATCCAAAGCAGGAGGTTCAGGCTCAGGCTGTTGAGGCCGAGCCAAAAGCAAAAGAGAAGGAAATTCCTTCTGTTCACGATGAAGAAGCTGAGCACATGGAGAAAAGACACTTGAATGTTGTGTTTATTGGGCATGTTGATGCTGGCAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAGGTTGATGATCGAACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTACATGGCTTATATTATGGACACAAATGAGGAGGAGAGAGTAAAGGGGAAGACTGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTCACCATTTTGGATGCACCTGGCCACAAGAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACATTGGGTGTGACTAAGCTGCTTGTGGTTGTCAATAAAATGGATGATCCTACAGTAAACTGGTCAAAAGAAAGGTATGATGAAATCGAGTCAAAGATGATTCCATTTCTAAAGCAATCAGGATACAATGTAAAAAAAGATGTCTTGTTTTTACCAATATCGGGGCTAATGGGCTCAAACTTAAAAACAAGAATGGATAGAAGCATTTGCTCATGGTGGGATGGACCTTGCTTATTTGAAGCCCTTGATAGTATTGAAGTTCCTATGGGAGATCCCAAAAGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTACTATTCGGGAGGGAGATTCCCTTTTCATCATGCCAAATAAGGATCAAGTAAAAATTGTTGCTATATATATTGATGAAAATCGGGTTAAACGCGCTGGACCTGGTGAAAATTTACGCGTTCGATTATCTGGTGTTGAAGAAGAAGACATATTGTCTGGGTTCGTTCTGTCTAGTATTGCAAATCCAATATCAGCAGTTACTGAGTTTGTTGCTCAGTTGGCGATCCTTGAATTACTAGACAACGCTATTTTTACTGCTGGATACAAAGCTGTTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTTGAGCTATTGCAACAAATTGATCCAAAGACAAAGAAGCCCATGAAAAAGAAAGTTCTCTTTGTAAAGAATGGTGCTGTTGTATTATGCCGTGTTCAGGTTAATAACATGATATGCATTGAGAAGTTCTCCGATTTTCCACAACTAGGGAGGTTCACTCTTCGTACTGAAGGAAAAACTATTGCTGTGGGAAAAGTCACTGCTCTGTGA 1512 0.4081 MDIEEDIRSLQLDSAEDINGVVNPEDEKPDVDKMDEGLLSGSDPKQEVQAQAVEAEPKAKEKEIPSVHDEEAEHMEKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDDPTVNWSKERYDEIESKMIPFLKQSGYNVKKDVLFLPISGLMGSNLKTRMDRSICSWWDGPCLFEALDSIEVPMGDPKSPFRMPIIDKFKDMGTVVMGKVESGTIREGDSLFIMPNKDQVKIVAIYIDENRVKRAGPGENLRVRLSGVEEEDILSGFVLSSIANPISAVTEFVAQLAILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDPKTKKPMKKKVLFVKNGAVVLCRVQVNNMICIEKFSDFPQLGRFTLRTEGKTIAVGKVTAL* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0399 503 PRINTS GTP-binding elongation factor signature 81 94 IPR000795 GO:0003924|GO:0005525
Mal5g0399 503 PRINTS GTP-binding elongation factor signature 176 187 IPR000795 GO:0003924|GO:0005525
Mal5g0399 503 PRINTS GTP-binding elongation factor signature 220 229 IPR000795 GO:0003924|GO:0005525
Mal5g0399 503 PRINTS GTP-binding elongation factor signature 160 170 IPR000795 GO:0003924|GO:0005525
Mal5g0399 503 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 77 306 IPR000795 GO:0003924|GO:0005525
Mal5g0399 503 MobiDBLite consensus disorder prediction 21 40 - -
Mal5g0399 503 SUPERFAMILY Translation proteins 301 393 IPR009000 -
Mal5g0399 503 Gene3D Translation factors 395 503 - -
Mal5g0399 503 MobiDBLite consensus disorder prediction 1 65 - -
Mal5g0399 503 Gene3D Translation factors 306 391 - -
Mal5g0399 503 PANTHER BNAA06G12300D PROTEIN 2 498 - -
Mal5g0399 503 CDD EF1_alpha 81 301 - -
Mal5g0399 503 Gene3D - 58 301 IPR027417 -
Mal5g0399 503 CDD eRF3_II 308 389 - -
Mal5g0399 503 Pfam Elongation factor Tu GTP binding domain 77 279 IPR000795 GO:0003924|GO:0005525
Mal5g0399 503 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 133 148 IPR031157 -
Mal5g0399 503 PANTHER TRANSLATION FACTOR 2 498 - -
Mal5g0399 503 CDD eRF3_C_III 395 503 - -
Mal5g0399 503 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 398 502 IPR009001 -
Mal5g0399 503 Pfam Elongation factor Tu domain 2 321 387 IPR004161 GO:0005525
Mal5g0399 503 Pfam Elongation factor Tu C-terminal domain 393 502 IPR004160 -
Mal5g0399 503 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 312 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0399 Mal-Chr5 6037853 6047897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0399 57 501 Eukaryotic Initiation Factors Gene Family AT5G10630 36.703 2.49e-95 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0399 K03267 - gmx:100793653 855.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0399 5 6037853 6047897 Mal5g0399 5 6037853 6047897 ECH