Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0380 ATGTCTTCTGTGACACAAGAAACAAAAACACTACAACAACAACAACAACAACACATGAAATGGAGAAAACCACCCAGAAACCAAAACCACAAACCCATTTCAGAAACGGATCCATTAATCCGACCCATTATCCAATCCACTCGCTGCAAGTCCACAATTTCATCTCTTCTTCTCTCCACATTCTCCAATGAAACCTCAACAACCTCACAACAACAACCCACCAACAAAAAGATAAACTTTTCATCTGCTGCAGCTACCTTCAGAGGTTTAGGATGCACTGCCGGAGCATCTCAGCAGGTGTCGGTGCCGGCCGTGATTCGTGCTTCAGCAGATTGGCCTCATCAAGGTAAGAAAACCAGAAAAAAGAAGCACAAAAACAGCAATGATGTTTCTTCTGCTGCTTGTGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGATTCTCAGCAGATGCTGCTGCATCTGTGGATTGTGTTGTGTCTAAGAAGAATGTGTCTTCAAGAGCTAAAATTGATGTGGACAAGATAACTCACAGAGAGCCTTCATCTTCTTTCCGAAGGCGCACTACTGTCTACCCAGAAACCTTCTCTTTTCCGGACACCGATCCTGACATTTTCACAGCATGCTCTTTTGGAACTGCAACATATCCTCGCCATATCAGAGATATTTCTTCTGATGATTTTGCTGAGATAATGGCGCTTCAAGGAAGAATACTAATGGGAGGACGATTCAATTCGCGTGATCTTTACAGAGATTGGAGACTGGATGTTGATAACATGTCATATGAGCAATTGCTTGAACTCGGTGAGAGAATTGGTTATGTCAATACTGGACTTAAAGAAGATGAGATGGAACCTTACATAAGGAAGACTAAGCTTCAGTTTTCAGATGATGCATCAAAGCACCAAGTAGACAAAAAGTGCAGCATTTGCCAGGAGGAGTTTGAAGTAGATGATGAGCTTGGGAGGCTTAACTGTGATCACTTGTATCACTTTCAATGTATACAACAATGGGTTGCACACAAAAATTTCTGTCCTGTGTGTAAGCAGCAGGTTGCAGCTCGACACTGA 1074 0.4246 MSSVTQETKTLQQQQQQHMKWRKPPRNQNHKPISETDPLIRPIIQSTRCKSTISSLLLSTFSNETSTTSQQQPTNKKINFSSAAATFRGLGCTAGASQQVSVPAVIRASADWPHQGKKTRKKKHKNSNDVSSAACVDFQDVWCGPGIGFSADAAASVDCVVSKKNVSSRAKIDVDKITHREPSSSFRRRTTVYPETFSFPDTDPDIFTACSFGTATYPRHIRDISSDDFAEIMALQGRILMGGRFNSRDLYRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDEMEPYIRKTKLQFSDDASKHQVDKKCSICQEEFEVDDELGRLNCDHLYHFQCIQQWVAHKNFCPVCKQQVAARH* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0380 357 SMART ring_2 309 349 IPR001841 -
Mal5g0380 357 MobiDBLite consensus disorder prediction 1 36 - -
Mal5g0380 357 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Mal5g0380 357 SUPERFAMILY RING/U-box 308 354 - -
Mal5g0380 357 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 12 357 - -
Mal5g0380 357 MobiDBLite consensus disorder prediction 1 22 - -
Mal5g0380 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 12 357 IPR045191 GO:0061630
Mal5g0380 357 Pfam Ring finger domain 308 350 IPR001841 -
Mal5g0380 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 355 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0380 Mal-Chr5 5847469 5850736 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0380 17 264 C3H Transcription Factor Family AT1G73760 40.000 7.17e-48 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0380 - - cam:101510167 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0380 5 5847469 5850736 Mal8g3801 8 110224836 110229524 ECH
Mal5g0380 5 5847469 5850736 Mal5g0380 5 5847469 5850736 ECH