Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0345 ATGGCCTCTTCTTCCGTTTCCTTTGAGAAACAAGTGCTTCCTCAACAATTACCACCAAATGTTAGGGTTCTTGTGATTGATCATGACATCAATCAACTAAATGCTATTGAGAAAATGTGTTCTCAATTCAATTACACAGTTAAGACATACTCTAAGGTTTCTTTAGCCCTAAATCATTTGATGAAAAATAAGGGTTGTTTTGATGTGCTAATACTTGATGCTCAAATGCCGGACATGGATTCGTACCAATTTTTGCAACAAGTTACAAAAAAGATGGACATTCCGGTCATTATGATGTTTGTTGATGGATCAACAAGTGAAGTAATGAAGGCAATTGAAAATGGAGCTTGTGATTGTTGGATCAAGCCATTTTCGGAGAATCAAGTCAAGAACATGTGGCAACATGTTGTAAGGAAAATGCTGAATGTTAAAAAAAGGAGAAGAGATGATTCAAAATTACCTTTAATTCATGCAAGACAGGAAAATGGTAATGAAGAAAAACATGAACCACAACCAAAGAAGGCACGTGTGGCATGGTCACTAGAATTGCATAAAAAATTTGTCAAGGCTATAAAGGAACTCGATGTCTATAGTATGCATTCTTTACCAATTCTTGCAGTACCAACAAAAATTCTTGAACTGATGGATGAGCCTGAATTGACAAGAGAGCATGTAGCTAGTCATCTTCAGAAATATAGAATTCATTTGAAGAAAGAGAAGGAGAAACAAGAAAAAGGAACTGCCATAGCTATGGAATCCAACAATTCACATGGATCTTCAGAATTTGATTTTCAAGCTTATGATGCTTCTATTCTTGCAATGGCACAACAGAACCAAAACCAAAATGCCATATTGAAATCATCATTGTGGCCTCACAATTCTAATGTTGCAGGACAACAATATTCAATGACATATGGTTGCAGTTCTCAACAAGTTCCAAACAATTTGTTAGCAACAAATTTTCCTCATCAGCCCAACATGAGCTTGCATAATGAATATGCAACATCATCATCAAGATTTGGAACATTGGAGCAGCTTCCATGTGAACCTAATAATAATTTGAAGAATATTAGCAGTAATGCAATATTGCCTCTGGAGCAACAAACACCAATGTATGTTCATCCGATGACAATGTCAATCAATAGTGTTCATCCTCTTCCTCAACATTTTCATAATCAAACTAGTGCAATCAATGTTGTTTCTGCAACAAACAATTCCGAGGAGGAAAATCCATCTTCTATCAACCAGCAGAATTGCGATGGATTTGATACTAATTCTATTATGTAA 1287 0.3559 MASSSVSFEKQVLPQQLPPNVRVLVIDHDINQLNAIEKMCSQFNYTVKTYSKVSLALNHLMKNKGCFDVLILDAQMPDMDSYQFLQQVTKKMDIPVIMMFVDGSTSEVMKAIENGACDCWIKPFSENQVKNMWQHVVRKMLNVKKRRRDDSKLPLIHARQENGNEEKHEPQPKKARVAWSLELHKKFVKAIKELDVYSMHSLPILAVPTKILELMDEPELTREHVASHLQKYRIHLKKEKEKQEKGTAIAMESNNSHGSSEFDFQAYDASILAMAQQNQNQNAILKSSLWPHNSNVAGQQYSMTYGCSSQQVPNNLLATNFPHQPNMSLHNEYATSSSRFGTLEQLPCEPNNNLKNISSNAILPLEQQTPMYVHPMTMSINSVHPLPQHFHNQTSAINVVSATNNSEEENPSSINQQNCDGFDTNSIM* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0345 428 CDD REC_typeB_ARR-like 23 137 - -
Mal5g0345 428 SMART REC_2 21 133 IPR001789 GO:0000160
Mal5g0345 428 Gene3D - 17 144 - -
Mal5g0345 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 13 417 - -
Mal5g0345 428 SUPERFAMILY CheY-like 19 153 IPR011006 -
Mal5g0345 428 MobiDBLite consensus disorder prediction 151 172 - -
Mal5g0345 428 Gene3D - 171 239 - -
Mal5g0345 428 PANTHER TWO-COMPONENT RESPONSE REGULATOR 13 417 IPR045279 GO:0009736
Mal5g0345 428 ProSiteProfiles Response regulatory domain profile. 22 137 IPR001789 GO:0000160
Mal5g0345 428 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 174 235 IPR006447 GO:0003677
Mal5g0345 428 Pfam Response regulator receiver domain 23 132 IPR001789 GO:0000160
Mal5g0345 428 MobiDBLite consensus disorder prediction 403 428 - -
Mal5g0345 428 SUPERFAMILY Homeodomain-like 171 238 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0345 Mal-Chr5 5442366 5444488 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0345 9 238 Response Regulator Gene Family AT4G31920 39.506 1.07e-44 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g0345 Response_reg 1.2e-15 CL0304