LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal5g0344	ATGGCTATGGCAAGAGATAAAAAAGAAGATGAAGAAGAGGTACACAATCAAAATCAAAAAGGTGGGAAGAGATTGAAATGCATGAACAAGATGAAGAATGAACAAGAAAAGCAAGTAGTATATGAAGAAGAAGAAGAAGAAAGTGAGCTTCCTTTGAAACCAGAGCTTTTCTTCTACCCAACAACACCAACATCCTTTGTTGTATCAGATGCACTTGAATTAGATTTTCCAATCATTTATGTTAACAAAGTCTTTGAAATTTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGCAACTGCCGGTTCTTACAGTACAGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTCAACAGACTCAGGCTTACACCAATTCATGATGATGATGGAGTCGTGACACACGTAATAGGTATCCAAATCTTTTCCGAGGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAGAGTGGGAAATTATTGTACACTCCGCAGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATCGGTTCTGTTTGCAGGAGGATCCGTCAATTAACAAAGAACGAGCATGTTAGGAAGATGGTTTGTCAAAATGCATGGGGAAAAGAAGTGACAGGTACATTGGAACTTATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAGCTTACTACTCTCGAGGCTGTTTGCTGGAAAAAAGTGACAGTTGGAGGCGGGGTTGAGCCTTCGCGTTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTTAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCATCCCCGCCCGGACGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTAGATGCTCAACAGCCAACATGGAAGGAAGTCTTCGGCGAAGCACCACCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCAAAATTGGTTGTCTCGGGCGGTTGCACAGATGCTGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCATCTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTTATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAGCCACAATGGAGGCAGCTAGAATGTAGTGCGTTCAATGGTTTATCAAATCAAAATGCTGTTGTCCCGCCTCCTAGACTAGATCATGTTGCTGTAAGCATGCCTTGTGGGAGAGTTATTATATTTGGAGGTTCCATTGCTGGTCTTCATTCGCCATCTCAGCTATTTCTATTGGACCCTTCCGAAGAGAAACCAACCTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTACTCAATGAGTTGCATGAGTTATGCTTGGCAAGCCGACAAGACTCTGACATGTGA	1914	0.4399	MAMARDKKEDEEEVHNQNQKGGKRLKCMNKMKNEQEKQVVYEEEEEESELPLKPELFFYPTTPTSFVVSDALELDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHVIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPQQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPSSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFNGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPSEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM*	638

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Mal5g0344	637	SUPERFAMILY	PYP-like sensor domain (PAS domain)	71	173	IPR035965	-
Mal5g0344	637	MobiDBLite	consensus disorder prediction	1	20	-	-
Mal5g0344	637	SUPERFAMILY	Kelch motif	537	627	IPR015915	GO:0005515
Mal5g0344	637	SUPERFAMILY	Kelch motif	305	522	IPR015915	GO:0005515
Mal5g0344	637	Gene3D	PAS domain	59	184	-	-
Mal5g0344	637	Pfam	Galactose oxidase, central domain	318	368	-	-
Mal5g0344	637	PANTHER	BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR	16	635	-	-
Mal5g0344	637	SMART	pac_2	137	178	IPR001610	-
Mal5g0344	637	Gene3D	-	501	629	IPR015915	GO:0005515
Mal5g0344	637	Pfam	PAS domain	73	173	IPR000014	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal5g0344	Mal-Chr5	5432795	5435421	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal5g0344	65	186	AGC Kinase Gene Family	AT5G58140	33.871	1.13e-12	69.3

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal5g0344	K12116		-	gmx:100301889	1132.86

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal5g0344	5	5432795	5435421	Mal5g0344	5	5432795	5435421	ECH

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