Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0342 ATGCTCACAAGAAGAAAATTCCTCACATTATTTTCATCATGCAAACTTTCTCAACTCATTTCTCATCAAAATGCACTTCCACATCCAATACACAACCCTTCCCCCCAAATTTCAACCAATTTTAGGGTTTTACTATTCAATCTCTATGGAACCCAAGATTCCAAATTTCCCGAATACGAGATGCCTACAGTTACATGGGGTGTCATTCAAGGTCGCAAAGAGAAACTCGTTTCGCGGGTCATCATCTTTGATTATCTCAAGGGTTTGGGAATTATTCCTGATGAATTGCAGGATTTGGAGCTTCCTTCAACCGTTGAAGTCATGAGGGAACGTGTTGAGTTTATTCAGAAATTAGGGTTAACGATTGATGATATTAATCAGTATCCTTTGATGTTAGGTTGTAGCGTGAGAAAAAATATGATTCCTGTTTTAGGGTATTTGGAAAAGATTGGGATTTCTAGGTCTAAACTTGGTGAATTTGTTAAGAATTATCCTCAGGTTTTGCATGCTAGTGTTATTGTTGAGCTTGCTCCTGTTATTAAGTTCCTTAGAGGGCTTGATGTGGAGAAAGATGATATTGGGTTTGTGTTGCAAAAATATCCTGAACTTTTAGGGTTTAAGCTTGAAGGTACTATGAGTACTTCAGTAGCTTATCTTGTTAGTATTGGTGTTAATCCTAGGGATATTGGTCCAATGGTTACACAGTATCCTTATTTTTTAGGGATGAGAGTTGGTACTATGATAAAGCCTCTTGTTGATTACTTGGTTAATTTAGGGTTGCCTAAGAAGATTCTAGCTAGGATGTTGGAGAAAAGAGCTTATTTACTTAGCTATGATCTTGAAGAGACTGTGAAACCTAATGTTGATTGTTTGATTAGTTTTGGTTTGAGGAAGGAATGTTTGCCTTCGGTTATTGCTCAGTATCCGCAGATTCTTGGCTTACCTCTTAAGGCGAAATTGTCTTCGCAACAATATTTTTTCAGTTTGAAGCTTAAGATTGACCCGGAAGGGTTTGCGAGGGTGGTGGAGAAGATGCCACAGGTGGTTAGTCTTCATCAAAATGTGATTATGAAGCCGGTTGAGTTTTTACTTGCTAGGGCAATACCGTCACAGGATGTAGCTAGTATGGTGATCAAATGTCCTCAATTGGTTGCGTTGCGAGTTGGGCTCATGAAAAACAGTTATTACTTCTTCAAAAGTGAGATGGGGAGATCCGTAAAAGAGCTTGTGGAGTTCCCTGAATACTTTACTTATAGTTTGGAATCAAGGATTAAACCTAGATATGAGAGGCTTAAGACCAAGGGGATAAAGTGTTCATTGAATTGGATGCTGAATTGCAGTGACCAGAGATTTGAAGAGAGATTGCAGGGAAATTATATCGAAACCGAAAGCATAGGTCCTTCATTCTGTATTGGTGGGAAATTAGAGCTACCAGGGAATGACATAGTTTCAGATGAGGAAGAGGAGAGTGATGATGAAATGCTATACAGAAGAACTGTTTCTCTTTAG 1509 0.3863 MLTRRKFLTLFSSCKLSQLISHQNALPHPIHNPSPQISTNFRVLLFNLYGTQDSKFPEYEMPTVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFIQKLGLTIDDINQYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKNYPQVLHASVIVELAPVIKFLRGLDVEKDDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTMIKPLVDYLVNLGLPKKILARMLEKRAYLLSYDLEETVKPNVDCLISFGLRKECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNVIMKPVEFLLARAIPSQDVASMVIKCPQLVALRVGLMKNSYYFFKSEMGRSVKELVEFPEYFTYSLESRIKPRYERLKTKGIKCSLNWMLNCSDQRFEERLQGNYIETESIGPSFCIGGKLELPGNDIVSDEEEESDDEMLYRRTVSL* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0342 502 Gene3D Transcription termination factor 3, mitochondrial 108 248 IPR038538 -
Mal5g0342 502 Gene3D Transcription termination factor 3, mitochondrial 249 462 IPR038538 -
Mal5g0342 502 PANTHER CGI-12 PROTEIN-RELATED 44 485 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 122 153 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 374 405 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 158 189 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 302 334 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 406 437 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 194 225 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 339 369 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 SMART mt_12 230 261 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 Pfam mTERF 144 452 IPR003690 GO:0003690|GO:0006355
Mal5g0342 502 PANTHER EXPRESSED PROTEIN 44 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0342 Mal-Chr5 5416804 5418312 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mal5g0342 mTERF 6.7e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0342 K15032 - gmx:100809590 827.394