Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0259 ATGGAGGAAAAAATCATTGAACACAAAAGTGTTACCACAAAGCTTGTGAAGTCTAGTTTCATGTCTTCTTTGCCAAAAAGTGTTACAATCTCAGTTACTGATAACTATGCCACAGACTCATCAAGTGATGAAGAACAACAAGGAAAAAATGGTTTTGTTCAAATAACAAGAAAAATAGTGAACGAGGTAAGATTTCAAGAATGTTCCACTCTTTCTAACAAGAACAACAAAAAGAGACATGAAGAGAAAAAGAACAAGAAGAATATTGGTGTTGTTGAATGTTGTTTGGAACAGAAGCCTAAACAAATTATAAATGATGTTGTTTATCAAAAGTTTCGCGGCGTTAGACGAAGGCCTTGGGGTAGATTTTCTGCTGAGATTCGCGATCCGCGGCTTCAAAGGAGAAAATGGTTAGGGACTTATGATACTGCTGAAGAAGCTGCTTTGGTTTATGATAGAGCTGCAATTGATTGTAGAGGTGCTAATGCTGTTACAAATATCATCAAACCGCCACAGAAACAAGAACAACAGAAGAAAAAATCAGTGAAAGATGAATTTGTTTGTGACAAAAATGTATATGTTGAATATGCTGATAATGTTTCTGTTGAGGATTGTAATGGTAGTTCATCTTATTCTCAAGATTCTGTTAGTGAAATTTGGACTGAAAGGATGAATGATCAAGAATGGATTAGAGAGATAACTGGAGAGGAATATTTGGATGATGGTTTTATGTTTGTTGATGATTCATTTGGTTCTTTTTGGTCTTATTATGAACCTGTTCTTCCTACAATGGTTTCTGATGAGAGTGATTGCATTGTTGATAATATTCATCTTGAGGAGGATTTTGAATCAAGTAATTGGGAGGTTGATAATTACTTCAATGACTCTTTGTCAATGCATTGA 903 0.3466 MEEKIIEHKSVTTKLVKSSFMSSLPKSVTISVTDNYATDSSSDEEQQGKNGFVQITRKIVNEVRFQECSTLSNKNNKKRHEEKKNKKNIGVVECCLEQKPKQIINDVVYQKFRGVRRRPWGRFSAEIRDPRLQRRKWLGTYDTAEEAALVYDRAAIDCRGANAVTNIIKPPQKQEQQKKKSVKDEFVCDKNVYVEYADNVSVEDCNGSSSYSQDSVSEIWTERMNDQEWIREITGEEYLDDGFMFVDDSFGSFWSYYEPVLPTMVSDESDCIVDNIHLEEDFESSNWEVDNYFNDSLSMH* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0259 300 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Mal5g0259 300 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Mal5g0259 300 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Mal5g0259 300 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 296 - -
Mal5g0259 300 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 296 - -
Mal5g0259 300 SUPERFAMILY DNA-binding domain 111 167 IPR016177 GO:0003677
Mal5g0259 300 CDD AP2 110 166 IPR001471 GO:0003700|GO:0006355
Mal5g0259 300 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Mal5g0259 300 Gene3D AP2/ERF domain 110 168 IPR036955 GO:0003700|GO:0006355
Mal5g0259 300 Pfam AP2 domain 111 156 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0259 Mal-Chr5 4368520 4369422 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0259 1 297 AP2-EREBP Transcription Factor Family AT2G46310 32.407 2.30e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g0259 AP2 2.8e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0259 - - mtr:MTR_8g010340 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0259 5 4368520 4369422 Mal3g1373 3 59615344 59618206 PCT