Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0243 ATGGACAGAGAATGGGGTTCAAAGCCAGGAAGCGGCGGAGCCGCCACCGCACAAAACGAAGCAATAGACCGCCGTGAACGACTCCGGCGACTCGCTCTCGAGACAATAGATCTCGCCAAAGATCCCTATTTCATGCGCAATCATCTCGGTAGTTACGAATGCAAACTCTGTCTCACTCTTCACAATAATGAAGGTAACTACCTCGCTCATACCCAAGGGAAACGCCATCAAACCAATCTCGCTAAACGTGCTGCTCGTGAAGCTAAAGATGCTCCTACTCAACCTCAGCCTCATAAACGGAAGGTTAACATGAAGAAATCTGTTAAGATTGGGAGGCCTGGTTATCGTGTTACAAAGCAATTTGATCCTGATACGAAGCAAAGATCTCTGCTTTTTCAGATTGAATATCCTGAGATCGAAGATCTTGCCAAGCCTAGGCATCGGTTTATGTCCTCCTATGAGCAGAGGATTCAACCGTTTGATAAGAGATACCAGTATCTCTTGTTTGCAGCTGATCCTTATGAAACAATTTCATTCAAGGTACCGAGCACAGAGATTGATAAGTCAACTCCAAAGTTTTTCTCACATTGGGACCCAGATTCAAAGATGTTCACACTGCAGTTGTATTTTAAAACCAAGCCACCAGAGGTAACCAAACCACAGCCGCCTACCTCTGCACCCAACGGCACCACAGCACCTGGTGTTCCACCTAGGCCTATGCCCCCACCACCACAAGCTCCACTACCACCACCACCACCTCCTCCACAAGGGCTACCTCCCGGCGCACCTATGGGAAATCCTCCACGGGCCCCTCCACCTCCAATGTCAGGATCAATGCCACCACCACCACCTATGGCTGCAAATGGTCCTAGACCTGTACCTGGTGCAATGCCACCTCTTCCACCGCCAGCTCCCATTGGGGCTAGACCTCCATCAATGCCACCTCCACAAGGTTTTCCAGGCCAACAAATGCAGAGCTAG 981 0.4985 MDREWGSKPGSGGAATAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKDAPTQPQPHKRKVNMKKSVKIGRPGYRVTKQFDPDTKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRIQPFDKRYQYLLFAADPYETISFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKTKPPEVTKPQPPTSAPNGTTAPGVPPRPMPPPPQAPLPPPPPPPQGLPPGAPMGNPPRAPPPPMSGSMPPPPPMAANGPRPVPGAMPPLPPPAPIGARPPSMPPPQGFPGQQMQS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0243 326 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 110 204 IPR031781 -
Mal5g0243 326 SMART CactinC_cactus_3 89 216 - -
Mal5g0243 326 PANTHER SPLICING FACTOR 3A SUBUNIT 2 1 321 - -
Mal5g0243 326 Pfam Zinc-finger of C2H2 type 52 76 - -
Mal5g0243 326 SMART ZnF_U1_5 49 83 IPR003604 GO:0003676|GO:0008270
Mal5g0243 326 MobiDBLite consensus disorder prediction 1 21 - -
Mal5g0243 326 ProSiteProfiles Zinc finger matrin-type profile. 52 82 IPR000690 GO:0003676|GO:0005634|GO:0008270
Mal5g0243 326 SUPERFAMILY beta-beta-alpha zinc fingers 48 82 IPR036236 -
Mal5g0243 326 MobiDBLite consensus disorder prediction 214 326 - -
Mal5g0243 326 Gene3D Classic Zinc Finger 46 89 - -
Mal5g0243 326 MobiDBLite consensus disorder prediction 216 318 - -
Mal5g0243 326 Gene3D - 93 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0243 Mal-Chr5 4103517 4105994 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0243 1 294 C2H2 Transcription Factor Family AT2G32600 72.109 1.23e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0243 K12826 - egr:104425946 442.965