Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0226 ATGAATCACGGAAATACAAGGGCTAATCCATGTCTTTTGTGCCGATATATAAGAAGAAGACATGGTCCTAATTGTGAATTTGGCCAATTCTTTCCGGCCAATAGAAGTGAGGACTTTCTGAAAGCCCTTAGGTGTATTGGGTTAGGTAACCTAATGAGAATCATGCGAACAACAGAACCACATCAAAGGCAAGATGTGGCAAATTCTATCCTCACAGAAGGGAGAGCTTGGCAAATTTACCCTAATCAAGGGTTCGTTGGATACCATATGGATTTGGATGTCTTAATGAATTCCTTTTTGAATGAAACTGAAATGGTTAATAGATTATTATCATCACTTTGTCTGGATAGTGCAAATCCAAACAATACACCCTCTTCCATCTCTCCTATGGGTAACCAACCTTATAGTTCTAACATTCAAATCCCCAACTTGGCTATAAGGACTCCCGGAGACATCAGTATGGACATCATGGAGTACTACAATGCACAAGGTATTCCATGTATTTATGAAAAAGGAGAATCAAGTAATGCATCAAAGAGAAAGGAAGTTGATGAAAAGGGAAAAGGAATTCTTATTGAACAAGAGGCCACTAGTGATGAGGAGGAAGACTAG 612 0.3905 MNHGNTRANPCLLCRYIRRRHGPNCEFGQFFPANRSEDFLKALRCIGLGNLMRIMRTTEPHQRQDVANSILTEGRAWQIYPNQGFVGYHMDLDVLMNSFLNETEMVNRLLSSLCLDSANPNNTPSSISPMGNQPYSSNIQIPNLAIRTPGDISMDIMEYYNAQGIPCIYEKGESSNASKRKEVDEKGKGILIEQEATSDEEED* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0226 203 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Mal5g0226 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25-LIKE 9 172 - -
Mal5g0226 203 MobiDBLite consensus disorder prediction 171 203 - -
Mal5g0226 203 MobiDBLite consensus disorder prediction 174 195 - -
Mal5g0226 203 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Mal5g0226 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0226 Mal-Chr5 3889907 3890823 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0226 5 87 AS2 family AT2G19820 35.714 9.56e-13 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mal5g0226 LOB 8.9e-15 No_clan