Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0200 ATGGATACTACATTTACACCACCGTCACCACACCGTCCATCTCCGTTACAAAACATAAGCCCAAGCATTCTCATCATCATAACAATCCTCGCCGTCACCGTCATCGTTTCCCTCTTAATCTGTTTCCTCCTCCGCCACCTCAACTGTCACCGTCTCCGCCGTGATCCAACTCCAACAATCATTGAACCTCCTCACAGCCGCCGTATCACACCGGAAACAACACCTCCTTCAGTCATCGACTCACTCCCCTTATTCACATACTCCTCCATCTCCCGCCGCTCCTCCGCCGTCACCGCCGCTGACTGTGCCGTTTGTCTATCAAAATTCCGTAACACTGATCTTCTCCGTTCTCTTCCTCTCTGTTGCCATGCTTTCCATGCCGAATGCATTGACACGTGGCTCCGTTCGAATCTTTCATGTCCGTTATGTCGCTCCACCATTTTTCCTTCAGATTCTGATCTCGCGAAAATTCTCCGATCAACTTCCTCAGACAGTTTCCGAGTTGATATCGGAAACATCAGCCGGCGTGGAAACAACAATCCTAATACTGACGCAGTCACCGCCGCCGGAGATTCACGATCCTATTCCATTGGATCGTTTGAGTATTATGTAGTTGAGCCTTCGGAGGTTTCGTTTACGCAAGATCACCGGAGAAGTGTTTCCGATCAGAAGGACATTCACATTCCGGTATCGGAGGATTCATCAGTGACACATGAAGCTACTACCGCCGGTGAAGTTGCTGGAAGTGGACATTGGTTGAAGGATTACGTGGACAGACTTTCGGCTTCGATTTCATCGCGAACAGCATCGTTTAGAAGTTCTGGAAGATTCTTCGCCGGTGGTGGAAGTAGTCGGAGAATTGAGCCGGTTGATTATGATGTTGAAGGTAACAGAATTGGTGAGGAGATTAGTGAGATGTTTCGTTGGCTTTCAGGGGTATAA 942 0.4873 MDTTFTPPSPHRPSPLQNISPSILIIITILAVTVIVSLLICFLLRHLNCHRLRRDPTPTIIEPPHSRRITPETTPPSVIDSLPLFTYSSISRRSSAVTAADCAVCLSKFRNTDLLRSLPLCCHAFHAECIDTWLRSNLSCPLCRSTIFPSDSDLAKILRSTSSDSFRVDIGNISRRGNNNPNTDAVTAAGDSRSYSIGSFEYYVVEPSEVSFTQDHRRSVSDQKDIHIPVSEDSSVTHEATTAGEVAGSGHWLKDYVDRLSASISSRTASFRSSGRFFAGGGSSRRIEPVDYDVEGNRIGEEISEMFRWLSGV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0200 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 7 298 - -
Mal5g0200 313 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Mal5g0200 313 Pfam Ring finger domain 101 144 IPR001841 -
Mal5g0200 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 149 IPR013083 -
Mal5g0200 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 7 298 - -
Mal5g0200 313 SMART ring_2 102 143 IPR001841 -
Mal5g0200 313 CDD RING-H2_PA-TM-RING 101 144 - -
Mal5g0200 313 SUPERFAMILY RING/U-box 78 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0200 Mal-Chr5 3506652 3507593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0200 77 157 C3H Transcription Factor Family AT3G18930 50.000 2.73e-20 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0200 K10663 - gmx:100817751 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0200 5 3506652 3507593 Mal5g0200 5 3506652 3507593 ECH