Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0188 ATGGATGGTGATAAATCTAACTATTATTTGGATGAAGATGAGTTTCAAATAGAGAATGTGCAACAACAACAACCAAGTTTCTCTTTTGAGAGTGATAATTCTCAATCTTCAACCATACAATATATTAATAATATTGTTGATAATTTTTGTGTTACCACCACATTTCATGAAAACATGCTCAAGAGTAGTAATAGTTCCAATTCCCTCATTTCTCAAGAATATACTAGTGCTGCTAATTCACAACAATTAGCACCTTCTCAATACATTTTATCTTTTGAAAACTCAACTTTGGAACCTTCTCCTAATAGTGACATTGCAACATGTTCTTCTACCATGGTTCAAGAAAAGAACAATGTGAGTAGTGAATTACCAAAGGCAATTAAGAAAAGAACTAAGAATCGTAGAAGCTCTTCTTCTGAGATACAAGATCACATCATGGCTGAGAGAAAAAGAAGACAAGTTATTACTGAGAGGTTCATAGCACTATCTGCCACCATACCCGGATTGAAGAAGACTGATAAGGCCTACATACTTCAAGAAGCTATAAATTATGTGAAACAACTTCAAGAAAGGGTAAAGGAGCTAGAGAATCATCACAAAGGGAAGAAAGAAGATTCAATAATAATCATCAAGAAATCCCAAGCTTGCACAATAGAGAAAAAAATCAATGCATTTGAAGAGAACTCTGATAATGATCATCATAGATATTATTCCAAGAAAGAACTACCTAAGGTTGAAGCAAGAGTGGTACAGAAGGAAATTCTCATTGGAATCCATTGTGAGAAACAAAAGGATATTGTGGTCAGATTAATGGCCTTGCTTCAAAATCTTCATCTATCTCTTGCTAGTAGCAGTGTATTGCCATTTGGAACTTCCACTCTAAAAGTTACAATCATTGCTCAGATCAACTTATTGCATTGCATGCCCATGTCTAACTCTACTCTCTAG 948 0.3449 MDGDKSNYYLDEDEFQIENVQQQQPSFSFESDNSQSSTIQYINNIVDNFCVTTTFHENMLKSSNSSNSLISQEYTSAANSQQLAPSQYILSFENSTLEPSPNSDIATCSSTMVQEKNNVSSELPKAIKKRTKNRRSSSSEIQDHIMAERKRRQVITERFIALSATIPGLKKTDKAYILQEAINYVKQLQERVKELENHHKGKKEDSIIIIKKSQACTIEKKINAFEENSDNDHHRYYSKKELPKVEARVVQKEILIGIHCEKQKDIVVRLMALLQNLHLSLASSSVLPFGTSTLKVTIIAQINLLHCMPMSNSTL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0188 315 SMART finulus 145 194 IPR011598 GO:0046983
Mal5g0188 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Mal5g0188 315 Pfam Helix-loop-helix DNA-binding domain 143 189 IPR011598 GO:0046983
Mal5g0188 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 200 IPR036638 GO:0046983
Mal5g0188 315 Coils Coil 178 205 - -
Mal5g0188 315 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 1 310 - -
Mal5g0188 315 PANTHER BHLH TRANSCRIPTION FACTOR 1 310 - -
Mal5g0188 315 Gene3D - 139 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0188 Mal-Chr5 3319212 3339627 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0188 120 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.758 1.33e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mal5g0188 HLH 1.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0188 - - mtr:MTR_8g009020 410.223