Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0151 ATGCCTCCGAAGACGACGAAGAGAGGTGCGGCGGCGAGTGGTTCAAAGAGGGGTGGTAGATTATCCAGAGGGACACCTAAGTCCGCACAGAATCAACCTGAACCTGTGGAGGAGAAGACGGTGATTGAAGAAGAGAATCTTGTTGTTGAGGAAAAGCCTGTGGTGGAAGAGAATCCTGTTGTTGAAGATAAAGCTATTGATATGAATCAAATTGCTCCTGAGGCTGTAGAAGATGCTAATTTGATGAAAAAAGATGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAGAGATGAACGTCTAGATTTGGAGGATAATGATCCTGAGTATGAACCTGAGGAGTATGGTGGGGTTGATTATGATGAGAAGGAAATTGAACAAGAAGAGGGTCATGAGATGGGAGATGAAGTTGAGGAAGAAGCTGAAGACAATGTTGGTGAGGAAGAAGATGAAGTTGAGGAAGAAGTCGAAGATGGTCATGATGAAATTGAGGGAGAAGAGGATGATGAACATGCTCATGAGGAGCATGACCATGAGCACGCGGAGATGGCTGATGTGGAAGAAGAGGAACACCGTGAGGTTGTGAAGGAGAGGCGAAAGAGGAAAGAATTTGAAGTATTTGTTGGGGGCCTAGACAAGGATGCTACTGAAGATGATCTGAGGAAAGTTTTCGGTGAAGTTGGGGTTGTGACTGAGGTCAGGCTGATGATGAATCCTCAGACAAAAAAGAACAAGGGATTTGCATTCTTGCGTTTTGAAAATGTGGAACAAGCAAAACGAGCTGTAGCAGAGCTTAAAAATCCAGTGATTAATGGAAAACAATGTGGTGTTACTCCAAGTCAGGACAGTGATACCCTCTATTTGGGAAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTGAAGCATTATGGGGTTACAAATGTTGAGGATATAACTTTGGTAGAAGATTCTAATGATAAAGGAACAAACCGTGGATTTGCATTCTTGGAGTTTTCCTCTCGTTCAGATGCAATGGATGCCTTTAAGAGACTGCAAAAGAGGGATGTTGCGTTTGGAGTTGATAAGCCTGCAAAGGTTTCATTTGCAGATTCTTTTATTGACCCGGGTGATGAAATTATGTCACAGGTTAAAACTGTATTTATTGATGCACTTCCTCCTTCATGGGATGAAGATTATGTCCGGAATCTTCTCAAGAAATATGGCGAGGTTGAAAAGATTGAGCTTGCAAGGAACATGCCAGCTGCTCGTAGAAAGGACTATGGATTTGTTACCTTTGGTTCACATGATGCTGCCATAAGATGTGCTGAGAGCATTACTGGTACTGAATTGGGTGAAGGTGACAAGAAGGCCAAAGTGAGGGCTAGGTTATCAAGGCCACTTCAGAGAGGCCGTGGAAAACATGTTGGTCGTGGGGACTATCGCCCGAGTCGCGGATCTGCATTAATGTCAAGGCCTTCTTGGAGCCGACCTGCACCCCGTAGTTTTTCTTCGCGCAGCGTAAGAGGAATTGGAAGTCGTGCTCTGCCAGTCAGGCCTATTAGTGCTAGAGATAGACGCCCTGTCATGTCTGTACCAGTTAGAAGTAGGCCACTACCTCCTCCAGCTAGATCTTATGACAGAAGACCAGCTGTTGCTGCTTACTCAAAAAGCAGCGTGAAGAGAGATTATGGTCGACGTGAGGATCTACCACCTCCAAGAAGTAGAGTTGCTGCAGATTATGGATCAAGGGTGGCCTCTGAAAGACGCCCAACTTATAGGGATTATCCACCTCGTGGATCTGACTATGATCTCCCTAGAAGTACAGCTCGTGCTGCACCTAGGAGAGGTTATGTGGATGATGGTTACAGCCAAAGGTATGAGAGGCCACCTCCTCCTCCACCCCCTTCCCATCCAAGTTATCGTGAAGGACGCCCTCGTGATTATGATGCTCTATCTGGCTCAAAACGTTCTTATGCTGCCGTGGATGATGTTCCCCCGCGATACGCCGATACTGGTGCTCGCCAATCTAGAGCTCGATTGGAATATGACTATGGTGGCAGTGCTTCACAGTATGGTGATGCTTATGGTGACAGAGTTGGAAGATCTAGTCTTGGATATGGTAGTGGCAGCCGAAGTTCTATTTCTGGTCAAGATTCACATGGGGCGTATAGTAGTCGGCAGGGCATGAGTTATGGCGGAGGCTCTTATGGTGGTAGTGATGTTGGAGGCATGTACTCATCAAGTTATGGCGGTGATTACGTTTCTCGTGGAAATGATGTTGGCGGCAGCTCATATTCATCAATGTATTCTGGCAGGGGTGCGGGTGGCGGTAGTAGTTACATGGGCAGTGGTGGATCAGGATCTTATTATTGA 2367 0.4592 MPPKTTKRGAAASGSKRGGRLSRGTPKSAQNQPEPVEEKTVIEEENLVVEEKPVVEENPVVEDKAIDMNQIAPEAVEDANLMKKDEEEVKESIDEYERDERLDLEDNDPEYEPEEYGGVDYDEKEIEQEEGHEMGDEVEEEAEDNVGEEEDEVEEEVEDGHDEIEGEEDDEHAHEEHDHEHAEMADVEEEEHREVVKERRKRKEFEVFVGGLDKDATEDDLRKVFGEVGVVTEVRLMMNPQTKKNKGFAFLRFENVEQAKRAVAELKNPVINGKQCGVTPSQDSDTLYLGNICKTWTKEALKEKLKHYGVTNVEDITLVEDSNDKGTNRGFAFLEFSSRSDAMDAFKRLQKRDVAFGVDKPAKVSFADSFIDPGDEIMSQVKTVFIDALPPSWDEDYVRNLLKKYGEVEKIELARNMPAARRKDYGFVTFGSHDAAIRCAESITGTELGEGDKKAKVRARLSRPLQRGRGKHVGRGDYRPSRGSALMSRPSWSRPAPRSFSSRSVRGIGSRALPVRPISARDRRPVMSVPVRSRPLPPPARSYDRRPAVAAYSKSSVKRDYGRREDLPPPRSRVAADYGSRVASERRPTYRDYPPRGSDYDLPRSTARAAPRRGYVDDGYSQRYERPPPPPPPSHPSYREGRPRDYDALSGSKRSYAAVDDVPPRYADTGARQSRARLEYDYGGSASQYGDAYGDRVGRSSLGYGSGSRSSISGQDSHGAYSSRQGMSYGGGSYGGSDVGGMYSSSYGGDYVSRGNDVGGSSYSSMYSGRGAGGGSSYMGSGGSGSYY* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0151 788 SUPERFAMILY RNA-binding domain, RBD 283 449 IPR035979 GO:0003676
Mal5g0151 788 SMART rrm1_1 383 458 IPR000504 GO:0003723
Mal5g0151 788 SMART rrm1_1 206 279 IPR000504 GO:0003723
Mal5g0151 788 SMART rrm1_1 286 365 IPR000504 GO:0003723
Mal5g0151 788 PANTHER RNA RECOGNITION MOTIF 1 788 - -
Mal5g0151 788 Gene3D - 372 488 IPR012677 -
Mal5g0151 788 MobiDBLite consensus disorder prediction 762 788 - -
Mal5g0151 788 MobiDBLite consensus disorder prediction 704 724 - -
Mal5g0151 788 Gene3D - 132 285 IPR012677 -
Mal5g0151 788 CDD RRM_SF 287 365 - -
Mal5g0151 788 SUPERFAMILY RNA-binding domain, RBD 200 283 IPR035979 GO:0003676
Mal5g0151 788 Coils Coil 79 102 - -
Mal5g0151 788 MobiDBLite consensus disorder prediction 172 192 - -
Mal5g0151 788 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 788 - -
Mal5g0151 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 369 IPR000504 GO:0003723
Mal5g0151 788 MobiDBLite consensus disorder prediction 98 171 - -
Mal5g0151 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 353 IPR000504 GO:0003723
Mal5g0151 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 275 IPR000504 GO:0003723
Mal5g0151 788 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 384 449 IPR000504 GO:0003723
Mal5g0151 788 MobiDBLite consensus disorder prediction 79 192 - -
Mal5g0151 788 MobiDBLite consensus disorder prediction 524 649 - -
Mal5g0151 788 Coils Coil 139 170 - -
Mal5g0151 788 MobiDBLite consensus disorder prediction 79 97 - -
Mal5g0151 788 MobiDBLite consensus disorder prediction 584 598 - -
Mal5g0151 788 CDD RRM_SF 384 458 - -
Mal5g0151 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Mal5g0151 788 Gene3D - 286 368 IPR012677 -
Mal5g0151 788 MobiDBLite consensus disorder prediction 557 571 - -
Mal5g0151 788 MobiDBLite consensus disorder prediction 463 505 - -
Mal5g0151 788 CDD RRM_SF 207 278 - -
Mal5g0151 788 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 382 464 IPR000504 GO:0003723
Mal5g0151 788 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0151 Mal-Chr5 2805661 2809898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0151 207 445 Eukaryotic Initiation Factors Gene Family AT4G34110 24.303 2.82e-16 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0151 - - gmx:100779340 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0151 5 2805661 2809898 Mal5g0151 5 2805661 2809898 ECH
Mal5g0151 5 2805661 2809898 Mal3g2929 3 103719937 103724739 PCT