Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0122 ATGTGTTTGTTTTCCCGCTTCTCCCAATCCCTTATTCTAGAAATGAGATTTTACTCTTTCACAATCGCAATGAGAAAATTAAGAAGGCTTTCCTACAATACAAATGAAACTGTCCTGAGAGATACCTTTGAACAACATCGGCAAATCATTGAAGTTAAAGTAATATGTGACCACAAAACTGGGGAATCAAAGGGGTATGGATTTGTTAGGTTCAATTCTGAAACTGCTGCTGCCACAGCTCGCAAAGAATTGCACGGCCAGATAGTGGATGGAAGACGCATTCGAGTGGGTTATGCGCACAAAGGTTAA 309 0.4045 MCLFSRFSQSLILEMRFYSFTIAMRKLRRLSYNTNETVLRDTFEQHRQIIEVKVICDHKTGESKGYGFVRFNSETAAATARKELHGQIVDGRRIRVGYAHKG* 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0122 102 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 29 101 - -
Mal5g0122 102 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 95 IPR000504 GO:0003723
Mal5g0122 102 Gene3D - 26 102 IPR012677 -
Mal5g0122 102 PANTHER GLYCINE-RICH RNA-BINDING-LIKE PROTEIN-RELATED 29 101 - -
Mal5g0122 102 SUPERFAMILY RNA-binding domain, RBD 28 101 IPR035979 GO:0003676
Mal5g0122 102 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 101 IPR000504 GO:0003723
Mal5g0122 102 SMART rrm1_1 24 97 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0122 Mal-Chr5 2394740 2397773 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0122 27 97 Eukaryotic Initiation Factors Gene Family AT3G16380 33.803 6.68e-08 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0122 K13195 - gmx:100306540 119.012