Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0097 ATGCTAATTCCTTCATTCGAATCTTTTGATCAAGTTCAACACCACTCGTTTGATCTAGAACTTAAATACCAACACGATTTCCACACTCTCATCATGAATGCTAATTCCAACCACCAAACTTGCGATTCATCCTTGTACGGTTCATTTCCTTACAATCCCATGTTATTAAACTCTAAAGGTTCACATGAGGCTATTAACAACATCAACAATGTTAACGATGGCACCGATAAAAACAAATCACCAACGGCTGCTCATAAACCTCACCCGCCAATACCAAAGTGGAAGCGGTATAGAGGCGTGAGGCGAAGGCCATGGGGGAAATTTGCTGCGGAGATAAGGGATCCAAAGAAGAACGGAGGTAGAGCTTGGCTTGGAACTTACGAAACTGAAGAAGAAGCTGGTTTGGCTTATGATAGAGCCGCTTTCAAGATCCGTGTGGTGGCAGCTTCAAAGAACAGCTTGCCGGAGGCTAATTCTGAGCCTTCGGGAGGGATAATAAAGAAGAGGAAGAACTTAGTTGACGTGTTGAATAGATTAGCCAAGAATAGATGGCAATTAAGTGCAGGGTTTGAAATGGTTACGAGCTAG 588 0.432 MLIPSFESFDQVQHHSFDLELKYQHDFHTLIMNANSNHQTCDSSLYGSFPYNPMLLNSKGSHEAINNINNVNDGTDKNKSPTAAHKPHPPIPKWKRYRGVRRRPWGKFAAEIRDPKKNGGRAWLGTYETEEEAGLAYDRAAFKIRVVAASKNSLPEANSEPSGGIIKKRKNLVDVLNRLAKNRWQLSAGFEMVTS* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0097 195 Pfam AP2 domain 96 145 IPR001471 GO:0003700|GO:0006355
Mal5g0097 195 PANTHER ETHYLENE RESPONSE FACTOR 62 166 - -
Mal5g0097 195 Gene3D AP2/ERF domain 95 153 IPR036955 GO:0003700|GO:0006355
Mal5g0097 195 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Mal5g0097 195 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Mal5g0097 195 MobiDBLite consensus disorder prediction 71 92 - -
Mal5g0097 195 CDD AP2 95 152 IPR001471 GO:0003700|GO:0006355
Mal5g0097 195 PANTHER DNA-BINDING DOMAIN 62 166 IPR044808 GO:0003700|GO:0009873
Mal5g0097 195 SUPERFAMILY DNA-binding domain 96 146 IPR016177 GO:0003677
Mal5g0097 195 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Mal5g0097 195 ProSiteProfiles AP2/ERF domain profile. 96 155 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0097 Mal-Chr5 2026476 2027121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0097 71 152 AP2-EREBP Transcription Factor Family AT2G44840 62.651 3.05e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g0097 AP2 8.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0097 K09286 - gmx:100527194 163.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0097 5 2026476 2027121 Mal5g0097 5 2026476 2027121 ECH
Mal5g0097 5 2026476 2027121 Mal3g2966 3 104409770 104410396 PCT