Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0096 ATGATGAATCTCGAAGCTACAACTCTTGAATCCGATCTAGCTTTTCTCGAATCAATTCAACGCTACCTCCTCGACGACCACCATGACTTCAACCCTCTCGCCGCCGTAACCGCCGCCTCTCACGGCGTCGCTCCGGAGACCAACCGTACCTCTCCATCTTCCCCAACCAACAGCGGCAGTAGTGATTCAATCTCCCACGCGCTTCCGGAGTCGCGTGAATCACACGCGCCTCCTTGTTGGCAAAGATACAAAGGAGTGAGGCGGAGGCCGTGGGGAAAGTTCGCAGCTGAAATTAGAGATCCGAATAAGAACAGTGCAAGAGTGTGGCTTGGGACTTATGAGTCGGCTGAGGATGCGGCTTTGGCTTATGATCAAGCCGCTTTTAAAATGCGCGGCTCAAAGGCTAATTTGAATTTTCCGCACTTGATTGGTTCCGATGTCTCGGAGCCGACGGTAGTCACAGCTAAGCGGCATGCACCGAAGTTGTCGTCTAGGTCGCCGGTGCTTTTGGAGCCAAAAAGGAAAATGAGCCGAGTCAATGGCTATACGTTAATATGA 558 0.5215 MMNLEATTLESDLAFLESIQRYLLDDHHDFNPLAAVTAASHGVAPETNRTSPSSPTNSGSSDSISHALPESRESHAPPCWQRYKGVRRRPWGKFAAEIRDPNKNSARVWLGTYESAEDAALAYDQAAFKMRGSKANLNFPHLIGSDVSEPTVVTAKRHAPKLSSRSPVLLEPKRKMSRVNGYTLI* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0096 185 PANTHER DNA-BINDING DOMAIN 8 166 IPR044808 GO:0003700|GO:0009873
Mal5g0096 185 MobiDBLite consensus disorder prediction 43 67 - -
Mal5g0096 185 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Mal5g0096 185 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Mal5g0096 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 8 166 - -
Mal5g0096 185 MobiDBLite consensus disorder prediction 41 77 - -
Mal5g0096 185 CDD AP2 81 142 IPR001471 GO:0003700|GO:0006355
Mal5g0096 185 PRINTS Ethylene responsive element binding protein signature 122 142 IPR001471 GO:0003700|GO:0006355
Mal5g0096 185 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Mal5g0096 185 SUPERFAMILY DNA-binding domain 82 141 IPR016177 GO:0003677
Mal5g0096 185 Gene3D AP2/ERF domain 81 141 IPR036955 GO:0003700|GO:0006355
Mal5g0096 185 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0096 Mal-Chr5 2017811 2018368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0096 74 175 AP2-EREBP Transcription Factor Family AT2G44840 63.107 2.70e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g0096 AP2 7.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0096 K09286 - gmx:100805648 155.606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0096 5 2017811 2018368 Mal5g0096 5 2017811 2018368 ECH
Mal5g0096 5 2017811 2018368 Mal3g2967 3 104415048 104415674 PCT