Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0080 ATGGGTGAGAAAGATGATGAATTTTGTTTGGGTTTAAGCTTGAGTTTAGGATGTGGAAACAATCAAACACCTTTGAAGGTGAGTCACATGCAAAAGCCTCCTCAATCGGTTCCAAATCAAAGGGTTTCCTTCAACAACTTGTTCCATTTTCATGATCTGAGCACCGAAACGAGGTCGTTTCTCCGCGGAATAGATGCCAACTCACCACGACCTTCTACGGCGGTGACGGCCGCCGCATTCGACGAGGAGAACGGAGTTTCATCGCCGAACAGCACCGTATCAAGCATAAGTGGAAAACGGAGCGAGAGAGAAGGAAATGGAGACGAAAACGATGCTGTTGAGAGGGGTTCGTGTTCTCGAGGCGGCGGAAGCGACGATGATGACGGCGGAGGTTGCGGCGGCGACGGTGATTCTTCAAGGAAGAAGCTGAGATTGTCGAAGGAACAGTCATTATTGTTGGAAGAAACTTTCAAAGAGCACAATACTCTGAATCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAAGCCAAGACAAGTGGAGGTGTGGTTTCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAAACTGAAGTGGATTGTGAGTACTTGAAAAGATGTTGTGAGAATCTAACTGAAGAGAATAGAAGGTTGCAAAAGGAAGTGCAAGAGCTTAGGGCTTTGAAGTTATCCCCACAACTCTACATGCAAATGAACCCTCCCACCACTCTTACAATGTGCCCTTCGTGCGAGCGAGTTGCCGTGTCATCTACATCTTCCTCGTCAGCAGCCGCGCCCTCTAATCCAGCTCCAGCTAGCAATCCGTCAGGCCCGGGTGTTCAACGGCCAGTACCTGTCAACCCTTGGGCGGCAATGTCTATCCAAAACCGTTCCGGGCCATGA 906 0.4879 MGEKDDEFCLGLSLSLGCGNNQTPLKVSHMQKPPQSVPNQRVSFNNLFHFHDLSTETRSFLRGIDANSPRPSTAVTAAAFDEENGVSSPNSTVSSISGKRSEREGNGDENDAVERGSCSRGGGSDDDDGGGCGGDGDSSRKKLRLSKEQSLLLEETFKEHNTLNPKQKQALAKQLNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMQMNPPTTLTMCPSCERVAVSSTSSSSAAAPSNPAPASNPSGPGVQRPVPVNPWAAMSIQNRSGP* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0080 301 Coils Coil 202 232 - -
Mal5g0080 301 ProSiteProfiles 'Homeobox' domain profile. 136 196 IPR001356 GO:0003677
Mal5g0080 301 MobiDBLite consensus disorder prediction 101 115 - -
Mal5g0080 301 SUPERFAMILY Homeodomain-like 124 197 IPR009057 -
Mal5g0080 301 SMART HOX_1 138 200 IPR001356 GO:0003677
Mal5g0080 301 PANTHER - 9 295 - -
Mal5g0080 301 Pfam HD-ZIP protein N terminus 1 104 IPR006712 GO:0005634
Mal5g0080 301 MobiDBLite consensus disorder prediction 79 142 - -
Mal5g0080 301 Pfam Homeodomain 140 194 IPR001356 GO:0003677
Mal5g0080 301 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Mal5g0080 301 Pfam Homeobox associated leucine zipper 196 230 IPR003106 GO:0006355|GO:0043565
Mal5g0080 301 MobiDBLite consensus disorder prediction 258 301 - -
Mal5g0080 301 CDD homeodomain 140 197 IPR001356 GO:0003677
Mal5g0080 301 ProSitePatterns 'Homeobox' domain signature. 171 194 IPR017970 GO:0000981|GO:0006355
Mal5g0080 301 Gene3D - 132 201 - -
Mal5g0080 301 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 9 295 - -
Mal5g0080 301 MobiDBLite consensus disorder prediction 83 100 - -
Mal5g0080 301 SMART halz 196 239 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0080 Mal-Chr5 1870924 1873226 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0080 28 298 Homeobox Transcription Factor Family AT3G60390 64.912 4.30e-107 312
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mal5g0080 HD-ZIP_N 8.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0080 K09338 - gmx:100810641 396.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0080 5 1870924 1873226 Mal5g0080 5 1870924 1873226 ECH