Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0079 ATGCTGTTGAACAACCTTAAACGACATTTCTGTTCCAGCATCACAACAACAGCAACAACCTTAAAATCCTCAAAAATCAAAATCCCTGCTCATTACAAGAAGCTTGCTATAACACAAGCTCAACAAGCACTCACTGAATATCTCCACTCCACAAGATCCATCCCTTATGCTTTTGCAGATCAGATTTCCAAAAACTCAGTTCATTCTCTCTCTAATATTATTTCAAAGTTAGGTTCTTTTTCACCAAAAAAGTTGGGTTCTTTCACCAAAAAAGTTGAAAAGTTCTTAAGGTACAACCCCATCAATGAGTTTGAGTTTTTCTTTGAAAGCATTGGAATTCATCATACACATGTTTCTAGTATTTTGCCAAATGATAAGTTCTTTTTTTGTGAAGATGGATCACTTCTTGATTCTGCTTGTGTGCTTTGTGAATTTGGGTTTCCTTGGGATAAACTTGGTGTGATTTATACGGAGAGTGGTTTTATGTTTAGGAAAAGTGGTGCTGAGATAAAGAGTAGGCTTTGTTTGTTGAAAAGATATGGTTTTCGTAATGTGCAAATTGTTGGGATTTGTTTGACTTTTCCTTTTGTTTTTGGTGTGGAGGAAGGGGAATTTGTTGATGATGAGGTTGATGGGTTGCTTTCTGATTTGAGGTTGGTGTTTCTGGATTTTGATTTGGAAGGTTCTGTTGAAGGGAATGTGGATGTTTGGTACGATGTTTGTAGGAAAATTAAAGTGTTTTATGATTTGAATGATGGTAAAGGGAAGATAGGTGAACTCATTGGACGAAATGAACATGTGATTCTTGAGTATGGAGAAGAAGAATTGATTGAAAAGGTTGAGTTTTTTTGTAGATTCGGTGTCGAGAAGGAGGAAGTAGCTCGGTTTATTCTACAAGGTTCGGAGTTGTTGAGTCTCGATTTGGAAGTGACGGTGATTAACGTGTTGAAGCTGTTGAAACACATTGGAATGGATTCTAAAGGTCTTGGTGATGTCAAGAAGAACTATGCTCATGCGCTGGGAACAATAAAGTTGGTGAATCTTCCCAATGTGATGAGGGCTATGGGTTTACATGAATGGTTTTTCGATAAAATCAAGGATGGAAATCATAAGCTTTTAGTGAATTTTATCACAAGCTATCCCAATGAAGAGCATGATAAAGGTTATCAAAGTGGTTTGAACACAATTCAGGATGCAAGGACACTGTCTCACAATATGCGTAAATTAAATTTCATGCATACTATTGGCTTTGGTGAAAATGCTATGACAATGAATATCTTAACTAACATGCATGGAACAAGTGAAGAGTTACAAAAAAGATTTGATTGCCTTCTACATTTAGGGATTGAATACTCAAAGCTGTGTAAGATAATCACAAAGCTACCAAAGATTCTAAGCCAAAATCCTGAAACCCTAGAGAGAAAGATCAATTTCTTATGTCAGGAGATGGGACAATCCTTGGAGCTTTTGGACACTTTCCCGGCATTTATATGTTATGACTTAGAGAACCGAATTAAGCCTAGGTACAGATTCCTAATGTGGGTTTTGGAAAAGGGTTTGTCTTCCAAAAGCTATTCTATTGCAAGCATGGTTGCGACTAGTGACAAGAATTTTGTAGGCCGTGCTTTTGGAATTCACCCGGCCGCTCCGAAACATTGGTTTGAGCAATTCTATCCCAATAAATTGCGAGCTTCATGA 1698 0.3728 MLLNNLKRHFCSSITTTATTLKSSKIKIPAHYKKLAITQAQQALTEYLHSTRSIPYAFADQISKNSVHSLSNIISKLGSFSPKKLGSFTKKVEKFLRYNPINEFEFFFESIGIHHTHVSSILPNDKFFFCEDGSLLDSACVLCEFGFPWDKLGVIYTESGFMFRKSGAEIKSRLCLLKRYGFRNVQIVGICLTFPFVFGVEEGEFVDDEVDGLLSDLRLVFLDFDLEGSVEGNVDVWYDVCRKIKVFYDLNDGKGKIGELIGRNEHVILEYGEEELIEKVEFFCRFGVEKEEVARFILQGSELLSLDLEVTVINVLKLLKHIGMDSKGLGDVKKNYAHALGTIKLVNLPNVMRAMGLHEWFFDKIKDGNHKLLVNFITSYPNEEHDKGYQSGLNTIQDARTLSHNMRKLNFMHTIGFGENAMTMNILTNMHGTSEELQKRFDCLLHLGIEYSKLCKIITKLPKILSQNPETLERKINFLCQEMGQSLELLDTFPAFICYDLENRIKPRYRFLMWVLEKGLSSKSYSIASMVATSDKNFVGRAFGIHPAAPKHWFEQFYPNKLRAS* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0079 565 PANTHER CGI-12 PROTEIN-RELATED 18 558 IPR003690 GO:0003690|GO:0006355
Mal5g0079 565 Gene3D Transcription termination factor 3, mitochondrial 233 557 IPR038538 -
Mal5g0079 565 PANTHER TRANSCRIPTION TERMINATION FACTOR MTEF18, MITOCHONDRIAL 18 558 - -
Mal5g0079 565 Gene3D Transcription termination factor 3, mitochondrial 67 222 IPR038538 -
Mal5g0079 565 SMART mt_12 455 486 IPR003690 GO:0003690|GO:0006355
Mal5g0079 565 SMART mt_12 259 289 IPR003690 GO:0003690|GO:0006355
Mal5g0079 565 SMART mt_12 487 519 IPR003690 GO:0003690|GO:0006355
Mal5g0079 565 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Mal5g0079 565 Pfam mTERF 434 538 IPR003690 GO:0003690|GO:0006355
Mal5g0079 565 Pfam mTERF 243 341 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0079 Mal-Chr5 1837864 1840276 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mal5g0079 mTERF 1.6e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0079 - - gmx:100812245 690.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0079 5 1837864 1840276 Mal5g0079 5 1837864 1840276 ECH