Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0055 ATGCATGGGAAAAAAGAGCAAGAGCATGTAAGGAAAGGTCCATGGAAAACAGAAGAAGATGAAGTTTTACTTCATCATGTGAAGAAGTATGGTCCAAGAGATTGGAGCTCCATTCGATCCAAAGGTCTTCTTCAAAGAACTGGCAAGTCTTGTCGTCTTCGTTGGGTCAATAAGCTTCGACCAAACCTCAAAAATGGGTGCAAGTTTACAATAGAGGAAGAGAGGATTGTGATAGAGTTGCAGGAACAATTTGGGAACAAATGGGCTAAGATTGCATCCTATTTACCAGGAAGAACAGACAATGATGTCAAAAATTTCTGGAGCAGTAGACAGAAGAGATTGGCTAGGCTTCTCAAAACATCATCATCAACAAACTCAAAGTCACACAAAAACAAAACCAAAGTTTCTTCCCATGTTCCCACTTCCGAGGTTCCTTATAAGTTCAGTTCTTCATCAGAGGGAGAAACATCATCAATGCCTCAATCATGTTCATTACCATGCAATGAGAATTCTGATCAAGTTATCAAAATGGTTCCATTATTAGATCTTAAAAAATCCGAACAACCTTGTTTCGACGCGAAATATGTTGAAGAAGACTTTACCCCTTTTAATCAGAGCTACAACACCACGGAACACGTTGCATTTCCTCGGATTCCAGAACTCCAAACTGATCTTACTTTTCCAATGGAAAGGTTTGATGAACTAAATTTATTTGATGTGTTTGGTCCCTTGGATGCATCTGAGTTTGGAATGGTTCATTTTTTTGAGCCATTTGGGATTTGCAAAATTGATAATTTCTCAGGAAACATTGACAGTTTCTTTGATGATTTTCCAGAGGACATGTTTGATAACATAGATCCACCTACAAGTCCATCTAATAAGCTCTGA 888 0.384 MHGKKEQEHVRKGPWKTEEDEVLLHHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFTIEEERIVIELQEQFGNKWAKIASYLPGRTDNDVKNFWSSRQKRLARLLKTSSSTNSKSHKNKTKVSSHVPTSEVPYKFSSSSEGETSSMPQSCSLPCNENSDQVIKMVPLLDLKKSEQPCFDAKYVEEDFTPFNQSYNTTEHVAFPRIPELQTDLTFPMERFDELNLFDVFGPLDASEFGMVHFFEPFGICKIDNFSGNIDSFFDDFPEDMFDNIDPPTSPSNKL* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0055 295 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Mal5g0055 295 Gene3D - 67 140 - -
Mal5g0055 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Mal5g0055 295 PANTHER TRANSCRIPTION FACTOR DUO1 4 293 - -
Mal5g0055 295 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Mal5g0055 295 Pfam Myb-like DNA-binding domain 68 107 IPR001005 -
Mal5g0055 295 SMART sant 11 61 IPR001005 -
Mal5g0055 295 SMART sant 65 113 IPR001005 -
Mal5g0055 295 MobiDBLite consensus disorder prediction 118 163 - -
Mal5g0055 295 CDD SANT 68 107 IPR001005 -
Mal5g0055 295 Gene3D - 3 65 - -
Mal5g0055 295 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Mal5g0055 295 CDD SANT 14 59 IPR001005 -
Mal5g0055 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Mal5g0055 295 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0055 Mal-Chr5 1153914 1155812 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0055 1 291 MYB Transcription Factor Family AT3G60460 51.148 2.48e-86 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal5g0055 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0055 K09422 - gmx:100818656 367.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0055 5 1153914 1155812 Mal5g0055 5 1153914 1155812 ECH