Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0043 ATGGAAAAACATATCAACATAGAAAGTGATGCTGATGACACTTCTAGCACACCTTCTTTCTCTTCCTCCTCAACAACATCTACTTCATCAAATTCAGATACAAGCATCAAACAAGACATCAAAGCCTCTCCAAATGCAAAGGAGAGTAAGAAAAGGCAGAGAAGTGAAAGTGAAAATAATAGCACACATCCAACTTATAGAGGAGTAAGAATGAGAAATTGGGGAAAATTTGTGTGTGAAATTCGTGAGCCAAAGAAAAAATCAAGAATATGGCTTGGAACATACCCTACAGCTGAAATGGCAGCTAGAGCACATGATGTAGCTGCTTTAGCTATAAAGGGTCATTCAGCATACCTTAATTTCCCTGAATTGGCACAACAACTTCCAAGGCCAATAAGCACTTCTCCTAAAGACATTCAAGCTGCTGCTGCAAAAGCTGCAAACACTACATTTGTAGCTGAACCAAGACAAGAAGAACATGCCTCATCTTCAAGTTCAACTTTTACCAATGATGATGCTACATTGTTTGATTTGCCAGATCTTTTTCCTGATGATGGAAACAATGGACTTTGTTCTTATTCTTCAGAAAATTCTTCTTGGTATTTACGTGCAGTTGATAGTGGATTCAGGCTTGAGGAACCATCTTTTTGGGAGAAATACTAG 663 0.3831 MEKHINIESDADDTSSTPSFSSSSTTSTSSNSDTSIKQDIKASPNAKESKKRQRSESENNSTHPTYRGVRMRNWGKFVCEIREPKKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPELAQQLPRPISTSPKDIQAAAAKAANTTFVAEPRQEEHASSSSSTFTNDDATLFDLPDLFPDDGNNGLCSYSSENSSWYLRAVDSGFRLEEPSFWEKY* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0043 220 MobiDBLite consensus disorder prediction 1 67 - -
Mal5g0043 220 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Mal5g0043 220 PANTHER ETHYLENE RESPONSE FACTOR 13 220 - -
Mal5g0043 220 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Mal5g0043 220 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Mal5g0043 220 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Mal5g0043 220 Pfam AP2 domain 64 115 IPR001471 GO:0003700|GO:0006355
Mal5g0043 220 MobiDBLite consensus disorder prediction 11 42 - -
Mal5g0043 220 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 220 - -
Mal5g0043 220 MobiDBLite consensus disorder prediction 43 58 - -
Mal5g0043 220 SUPERFAMILY DNA-binding domain 65 123 IPR016177 GO:0003677
Mal5g0043 220 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Mal5g0043 220 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0043 Mal-Chr5 770148 770810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0043 53 216 AP2-EREBP Transcription Factor Family AT2G44940 50.239 5.59e-60 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal5g0043 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0043 - - mtr:MTR_8g006410 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0043 5 770148 770810 Mal5g0043 5 770148 770810 ECH