Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0033 ATGTTGGACTATGAATGGGGTAACCCATCAAACATGATGCTTACCGGAAATGAAGACAACTCCGCCGCAGCAGCAGCAGCCTCCGATCAAGCCAACCGTCAAATCTTTGACCACTATGCTTCTCAAGCCATGTTATCCGACAACTACCTTAACGGGCCTGGACCAACCATTGACATAAACAGTGGTGATTTCACTCATCACAACCAACAACACCATCACAACCATAACCAGTTTAGCCCACAGGCCCAGCAGCATCATATCCACCACTCCTTTTTCGACCCACGGGCTTTCCATGGAGGGTCATCAACTGGTTCTTCTTATCCTCCACCTCAACCACAACCTCCTTCCATGCTCTCACTTGACCCTCTCCATGGACATGGACATGGACATGGACATGGACATGGATTTCTCCTCGTGCCGAAATCTGAGGACGTTAACAGGCCCATGGACTTCGTGGGCTCTAGAATTGGACTCAACCTTGGCGGCCGCACGTACTTCTCATCCTCTGAAGACGACTTCGTCAGCCGCCTCTACCGTCGGTCTAGACCACCTGAGCCGGGTTCCACAGGTTCATCGAACTCGCCTCGGTGTCAGGCCGAAGGTTGCAATGCTGATCTATCTCAGGCGAAGCACTATCACCGCCGCCACAAAGTTTGTGAGTTTCACTCCAAGGCAGCCACCGTCGTTGCAGCTGGGTTGACTCAGCGGTTCTGCCAGCAATGCAGCAGGTTTCATCTTCTATCTGAGTTTGATAATGGAAAACGTAGCTGCAGGAAGAGATTGGCAGATCATAATCGTCGAAGAAGAAAAACTCAGCACCCAAATACTCAAGATATTCACAAATCTCACAATACTTTGGAAAATGCTGCTACAAGATCCCCGCCGGAGTCGGGAACTCAATCTTCATCCTCAGTGACTGTGGCGGTGTCTCCACCGGATTATTTTCGACAAAGGTCGTACCAAAGTCAAAGCCCTTCAACAACTTCAAGCTCAATGTTTTTCTCCAGCGGGTAG 1014 0.501 MLDYEWGNPSNMMLTGNEDNSAAAAAASDQANRQIFDHYASQAMLSDNYLNGPGPTIDINSGDFTHHNQQHHHNHNQFSPQAQQHHIHHSFFDPRAFHGGSSTGSSYPPPQPQPPSMLSLDPLHGHGHGHGHGHGFLLVPKSEDVNRPMDFVGSRIGLNLGGRTYFSSSEDDFVSRLYRRSRPPEPGSTGSSNSPRCQAEGCNADLSQAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQHPNTQDIHKSHNTLENAATRSPPESGTQSSSSVTVAVSPPDYFRQRSYQSQSPSTTSSSMFFSSG* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0033 337 Pfam SBP domain 197 270 IPR004333 GO:0003677
Mal5g0033 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 92 321 IPR044817 GO:0003677
Mal5g0033 337 MobiDBLite consensus disorder prediction 261 337 - -
Mal5g0033 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 8 92 321 - -
Mal5g0033 337 MobiDBLite consensus disorder prediction 278 337 - -
Mal5g0033 337 SUPERFAMILY SBT domain 195 274 IPR036893 GO:0003677|GO:0005634
Mal5g0033 337 ProSiteProfiles Zinc finger SBP-type profile. 194 271 IPR004333 GO:0003677
Mal5g0033 337 Gene3D - 187 258 IPR036893 GO:0003677|GO:0005634
Mal5g0033 337 MobiDBLite consensus disorder prediction 61 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0033 Mal-Chr5 572946 574845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0033 1 244 SBP-box Gene Family AT1G02065 44.788 2.41e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mal5g0033 SBP 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g0033 - - lja:Lj3g3v0499510.1 416.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0033 5 572946 574845 Mal5g0033 5 572946 574845 ECH