Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0020 ATGAATGTTAGAGATGAGGCAATGAAGGAGCTTATGAAAGGGCAAGAGTTTGCTAAGCAGCTTGGACAAGTAGTACTAGAAGTGATGAAGAATAACAAAAACATGAATCATTTAGGAGCAACCCAACAACTTGTCAGCAAGGTTGTCAACTCATTTACCAATACCCTCTTCCTTTTGAACAAACATCATCAAAGGAAGGAGGAGGAAGACTTTTCCTTCATTATTAAATCTGAAGAGGACTCTCAAGATAGTTGCAAGACTACTACTTCTGCCGGTGGTGGTGGTGGTGGTGGTAGAGGATCTAACAAAAGAAGAAAAACTACAGAAACGTATGAGGAAGTGTCTGAAAGACCAACAGATGATGGGCATGAATGGAGAAAGTATGGTCAAAAAACAATCCTCAATTCCAAATACTCAAGAGAATTGAAGAGAAGCCTCCCTTGTATAAGACCACCTATTACTTACGGCCACCACACTTGCAACAAAAACAATATCATATTTGAACCCACTTCTCCTCATGATCCCTCCTCCATATTGCTTAGCTTTAACAACACATTCCCAACTCCAACCAAACAAGATTGTCCCTTTTTATCAATACCGTCGTCATCATCATCGTCATCTTTTAATTCCTCACCTTCCTTGGATGAATACCTGCTCTCTCCTGAGCCAATTTTAGATAACTCTATTTCTACAACACATGTTAACGTTAGTAGTACTCTATCATCAACAACTACGCTACAATCTGATGATCACAAGGATATGATGATAATGTATGGTCTCTTGTACGATTCTGTTGAACTTGATCATGACTTCCTTCACCCTTTTCATGGGTTTCAATTATAG 843 0.3903 MNVRDEAMKELMKGQEFAKQLGQVVLEVMKNNKNMNHLGATQQLVSKVVNSFTNTLFLLNKHHQRKEEEDFSFIIKSEEDSQDSCKTTTSAGGGGGGGRGSNKRRKTTETYEEVSERPTDDGHEWRKYGQKTILNSKYSRELKRSLPCIRPPITYGHHTCNKNNIIFEPTSPHDPSSILLSFNNTFPTPTKQDCPFLSIPSSSSSSSFNSSPSLDEYLLSPEPILDNSISTTHVNVSSTLSSTTTLQSDDHKDMMIMYGLLYDSVELDHDFLHPFHGFQL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0020 280 Gene3D WRKY domain 102 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g0020 280 MobiDBLite consensus disorder prediction 102 124 - -
Mal5g0020 280 MobiDBLite consensus disorder prediction 82 124 - -
Mal5g0020 280 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 5 144 - -
Mal5g0020 280 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 154 271 - -
Mal5g0020 280 SMART WRKY_cls 119 162 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g0020 280 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 5 144 IPR044810 GO:0003700
Mal5g0020 280 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 154 271 IPR044810 GO:0003700
Mal5g0020 280 SUPERFAMILY WRKY DNA-binding domain 116 141 IPR036576 GO:0003700|GO:0006355|GO:0043565
Mal5g0020 280 ProSiteProfiles WRKY domain profile. 114 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Mal5g0020 280 Pfam WRKY DNA -binding domain 120 141 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0020 Mal-Chr5 408535 409869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0020 3 193 WRKY Transcription Factor Family AT2G40750 27.459 3.96e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Mal5g0020 WRKY 3.4e-06 CL0274