Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0018 ATGAATGAGCATAATATCATATCAATCATGGCTTCTTTGCTCCATCCAACTCCAACTCCAACTCCAACTCCAACTGTTACCACTTTACTTAAGCAGCGTACATCAACACTATGTTTCTTCTGTTCCTTAAAACCCCCCACCAATATTTCATACAATGTTTCTTTCTTAACTAACACAAACCGTGTCAATACCAAGTGTAATGCATTTTTTGATAATAATGTCGCCAATGGTTTGTTGGAGGTTGGTGGGGACCACTTTCCTTCCTTTCTCCGATCAGGACTACTTCAGTTTGAAGAATTATCAGACATGCAGAGATGGGAGTTACTTTTGTTTGGTGGACTCATATGGATATACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCCATTGATGCTTACCTTCTTGCTCCTCTTCAACTTGGTTTTGATAATTTATCTGGTAGGAGAAACTTGAAGACTAGTGATTTTCTTGTTGGAGATAAAATCGGTGAAGGGTCATTTGGTGTTGTTTATTCTGGTGTTTTGGTCTCAAAGAATGTGGTGGATGTAGAGGTGGACAAGAGAGGAAGATCCAAGGCAACAAGGTTGGAACCCAAATCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATTCGAGGTGCTGAAGAATTTGGTGAATTTGAGGAATGGTTCAATTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTGGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGGAGATCGTACTCTTGCCGATTACATGAAAGAGCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGCGTAGATTCTTCTAGACGAAATGCTTTGATCATCAAGCAAATCATGCGCCAGATAATTACTTCTCTTAAGAAAATTCATGATACAGGCATTGTTCACAGAGATATAAAGCCAGCCAACTTAGTGGTCACTAAACGGGGGGAGATTAAACTAATTGATTTTGGTGCAGCAACAGACCTTCGGATCGGAAAGAATTATGTTCCTGACCGCACCCTTTTGGATCCCGACTATTGCCCCCCAGAACTATATGTTCTCCCAGAAGAAACACCAAGTCCTCCACCAGCGCCAATTGCTGCGTTCTTTTCACCAATCCTATGGCAGTTAAACAGCCCTGATTTGTTTGATACTTATTCGGCTGGGATTGTACTCCTTCAAATGGCAATACCAACCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAATTTGGAAATAAAAACCTGTGGATATGACTTGAAAAAATGGAGGGAGTATACTCGCCTCAGGCCCGACCTCCAAATTCTTGATGGTGAATCTCGTAGAGGTTGGGACTTGGCAACAAAGCTTATCTCTGAGAGAGGTCCCTTAAGAGGAGGACGTTTATCTGCTGCTTCTGCTTTGAGACATCCTTATTTTCTTCTAGGAGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTAAGCTTAAGTAGAAAGTGA 1554 0.4118 MNEHNIISIMASLLHPTPTPTPTPTVTTLLKQRTSTLCFFCSLKPPTNISYNVSFLTNTNRVNTKCNAFFDNNVANGLLEVGGDHFPSFLRSGLLQFEELSDMQRWELLLFGGLIWIYLTARPGVLIGAIDAYLLAPLQLGFDNLSGRRNLKTSDFLVGDKIGEGSFGVVYSGVLVSKNVVDVEVDKRGRSKATRLEPKSKDKVILKKVKVGIRGAEEFGEFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKERNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKRGEIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDTYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREYTRLRPDLQILDGESRRGWDLATKLISERGPLRGGRLSAASALRHPYFLLGGDQAAAVLSKLSLSRK* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0018 517 ProSiteProfiles Protein kinase domain profile. 156 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g0018 517 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 6 515 IPR044803 GO:0004674|GO:0009579
Mal5g0018 517 Pfam Protein kinase domain 305 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g0018 517 ProSitePatterns Serine/Threonine protein kinases active-site signature. 325 337 IPR008271 GO:0004672|GO:0006468
Mal5g0018 517 Gene3D Phosphorylase Kinase; domain 1 143 265 - -
Mal5g0018 517 SMART serkin_6 156 498 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal5g0018 517 Gene3D Transferase(Phosphotransferase) domain 1 296 500 - -
Mal5g0018 517 SUPERFAMILY Protein kinase-like (PK-like) 151 499 IPR011009 -
Mal5g0018 517 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 6 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0018 Mal-Chr5 396092 398430 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0018 156 354 MAP Kinase Kinase Kinase AT3G13530 25.743 6.62e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Mal5g0018 Pkinase 1.8e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0018 5 396092 398430 Mal3g2504 3 96900243 96902993 PCT