Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g5079 ATGGGTGGAAGACTAAAAGGAAGTGAATGGATGAAGGGTAAAATGGTTGGATGTGGATCTTTTGGCAGTGTCCATCTAGCCATGAACAAATCCTCCGGTGGACTTTTTGTGGTGAAAACAGCGCATTCAGAGGCAGGACGTGATGCTCTGGAGAACGAGGTGAATATCCTAAATACTTTAAATTCATCATCACCCTATATTGTCCAATGTTTAGGGACTGAGTATGATCATCAAGATAACCAACTGCATGTTTTCATGGAGTATATGGCTGGGGGTAGTTTGGCTGATGTGTCACACAAGTTTGGTGGTTCATTAGATGAAGATGTTGTTCGTGTGTATACTAGACAAATTCTGCATGGGTTACATCATCTTCACCAACATCGAATTGTGCACTGTGACCTTAAGTGCAAAAATGTGCTTTTGGCCTCATCTGGGAATGTCAAGCTGGCAGATTTTGGGTGTGCAAAAAGGATAAAGAAAGACTTGAACATGAACAAATCATCATCATCATCATGCATTATTACTAATGGTGGCACTCCTCTATGGATGGCTCCCGAAGTATTACTAATGAGGAATAACAGTAGTATTAATGATGAGAGCCGGGCTGTTGATTTTGCCGCAGCAGATATATGGTCTCTGGGATGTACTGTTATTGAAATGGCCACTGGCAGGCCCCCTTGGGTAGATGATGACCTCATTCCTATTTCAAATCCAATGGCTGCTATGTTTAAGATTGCCTGTGGTGATGGGATACCTCAATTTCCAATTAATTTCTCTCAGGAGGGTTTCGATTTCTTGAGGAGGTGTTTGGTGAGAGATCCCAATAAGAGGTCTACTGCACAGGAGTTACTTAACCATCCATTTCTTGTTTCTACTTCTTTAACTCATCATAAACACTACTCTGCTTCCTCTCCCGCATCTGTCTTGGAGGTTCATCAGATTGAGGATCCATATGATGATGACTCAGATGATGATGATGAATTACAAAGTCCAGCAGGGGAGAATCGTTTCTCCATCACAAAAGAGTTTGTGTGCCCACAAGGAACAACAATGTGGCAACTGGAAGACAGTGCTTCAGGGAATCATTGGATCACTATTAGATCAAGGTGA 1110 0.4216 MGGRLKGSEWMKGKMVGCGSFGSVHLAMNKSSGGLFVVKTAHSEAGRDALENEVNILNTLNSSSPYIVQCLGTEYDHQDNQLHVFMEYMAGGSLADVSHKFGGSLDEDVVRVYTRQILHGLHHLHQHRIVHCDLKCKNVLLASSGNVKLADFGCAKRIKKDLNMNKSSSSSCIITNGGTPLWMAPEVLLMRNNSSINDESRAVDFAAADIWSLGCTVIEMATGRPPWVDDDLIPISNPMAAMFKIACGDGIPQFPINFSQEGFDFLRRCLVRDPNKRSTAQELLNHPFLVSTSLTHHKHYSASSPASVLEVHQIEDPYDDDSDDDDELQSPAGENRFSITKEFVCPQGTTMWQLEDSASGNHWITIRSR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g5079 369 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 368 - -
Mal4g5079 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE NPK1-LIKE 5 368 - -
Mal4g5079 369 ProSiteProfiles Protein kinase domain profile. 10 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g5079 369 Gene3D Transferase(Phosphotransferase) domain 1 8 330 - -
Mal4g5079 369 SMART serkin_6 10 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g5079 369 Pfam Protein kinase domain 12 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g5079 369 SUPERFAMILY Protein kinase-like (PK-like) 6 308 IPR011009 -
Mal4g5079 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Mal4g5079 369 CDD STKc_MAPKKK 9 289 - -
Mal4g5079 369 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g5079 Mal-Chr4 131110927 131112036 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g5079 10 358 MAP Kinase Kinase Kinase AT1G09000 35.870 1.28e-62 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Mal4g5079 Pkinase 1.3e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g5079 - K20716 mtr:MTR_2g005290 661.759