Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g5074 ATGGAGAGTCGAAAGGACAAAAGGAAGGTAATGAAGAAATTGAAGAGGAAGGAGAGAAGGAAAGAGATTGCTGAGAAGGAACGTTTGGAGGAAGAAGGTCGCCTCAACGATCCCGAAGAGCTGAGAAAGAGATTACTCTTGGAGCAGCTAGAGGCCGAGAGGATCGAAAGAGACAGGATCGCCTTCCAAGAGAGGGAGAAGGCTTGGATCATCAAACAACAACAACAACGAGAACAAGAAGAACTATCTCAACACCATAACAACTACAACGATAATAACAACGATCTCGAAGAAGAAGATGCATTACAAGAAGAAGAAGAAGAAGATGGTCCTCCGGAGATTATTTGGCTTGGAAATGAAATTATCATCAAAAAGAAGAAGAAAAAGTTGAACCCCGACCCCCTTCTACTCCACAACCACCAGGAGCAGCATGAGCATTGCGATGATGATAACAATAACAGAAGACCTACATCAAATCCCTTTCCTCCGGAATCTCCCTCTCAACCAGCGACTCTGGAGAATGTTACTCAACAACTACCCAATTTCGGAACTGAACTGGACAAAGCTCACTGTCCTTTTCACTTTAAAACTGCAGCATGTCGTTTCGGTGACCGATGTAGCAGAGTTCATTATTACCCCGATAAGTCCTGCACCCTTCTAATCAGAAATATGTACAATGGTCCTGGCCTTGCTTGGGACCAAGATGAAGGCCTTGAGTATACAGATGAGGAGGTTGAACGCTGTTTTGAAGAGTTTTATGAAGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTACAGTATAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTCGCTGGGAAACAGGTGAGCTGTAAGTTTGTTAATCTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCGTAATCCTGGTGGCGACTATGAATGGGCAGATTCCGACAAACCACCCCCGAAATTTTGGGTAAAGGAGATGGTTGCGTTATTTGGTCATTCTGATGATTGTGAGATCTCAAGGGTCCATGGAAAGTTTAGTGCGCTGAAGCACTCCAGCAATGTCCTAAAAGCAGATTCTGACAGGTACTCAAGAAGATCAAGATCTAGGGAGATGGGTCAGTTAAATGGTGGTCGTTCTAGTAGAAGAAAACAGGAAGATGAAAGAAAGCAAAGAATTCCTGATGAGGAGGGGAGTAGCAACTTTAAAGACAACCATAAAAGAAAATACAGGAACAAAACTCATGATTCTGATTCGGATAGGGAAGGGTTAGAAGAGGTAGATCGGAAAAAGTACAATGAACACACTAGGAAAAGCTCATTTAATAGGAACAAGGATAACAATAGCAGAAGGCATGAAGAGTATTCTGATGTGGATAGGGTTACTATAAACAGGGACCATGAAAAGCAGCATGATAGAAAAGGAAGGAACTCACAAAAGTGGAACCGGGATAGTAGGGACTGCATTTATGAGGCTGGATCTGATGAGGATAGAGATGGAGATAGAAGAAGACATCATAGTAGCCGAAGGAAAGGATCAAGACATCAAAGAAGAAGCAACAGTAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGGCCATGAAGAATATTCTGATGTGGATTGGGATACTTTGAGCAGGGACAATGAAAAGCAGCATGACAGCAAAGGAAGGAACTCACAAAAGTGGAACAAGGATAGTAGGTACCGGATTTATGAGGCTGGATCAGATGAGGATAGACAGAGAAAAAGGCACCGTAGTAACCAAAGAAGGAAAGGATTGAGACATCAGAGCAGGGACAACAGTAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGGCCATGAAGAATATTCTGATGTGGATTGGGATACTATGAGTAGGGACAATGAAAAGCAGCATGGCAGCAAAGGAAGAAATTCACAAAAAAGGAACGGGGATAGTAGGTACCAGATTGATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAAGCACCGTAGTAGCCAAATGAAAGAATCTAGACGTCAGAGCGGGGACAGCAGTTATGGAATTGATGAATCTGACAAAGATAGAGAGATGGAAACACAACATGATTACTCTAGGAAAAGCTCGAGACACAGAAGATCTGGTCTTCAAGACTACTGTGATGACTGA 2298 0.4217 MESRKDKRKVMKKLKRKERRKEIAEKERLEEEGRLNDPEELRKRLLLEQLEAERIERDRIAFQEREKAWIIKQQQQREQEELSQHHNNYNDNNNDLEEEDALQEEEEEDGPPEIIWLGNEIIIKKKKKKLNPDPLLLHNHQEQHEHCDDDNNNRRPTSNPFPPESPSQPATLENVTQQLPNFGTELDKAHCPFHFKTAACRFGDRCSRVHYYPDKSCTLLIRNMYNGPGLAWDQDEGLEYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDDCEISRVHGKFSALKHSSNVLKADSDRYSRRSRSREMGQLNGGRSSRRKQEDERKQRIPDEEGSSNFKDNHKRKYRNKTHDSDSDREGLEEVDRKKYNEHTRKSSFNRNKDNNSRRHEEYSDVDRVTINRDHEKQHDRKGRNSQKWNRDSRDCIYEAGSDEDRDGDRRRHHSSRRKGSRHQRRSNSNVTDESESDKDRGHEEYSDVDWDTLSRDNEKQHDSKGRNSQKWNKDSRYRIYEAGSDEDRQRKRHRSNQRRKGLRHQSRDNSNVTDESESDKDRGHEEYSDVDWDTMSRDNEKQHGSKGRNSQKRNGDSRYQIDEAGSDEDRHRKKHRSSQMKESRRQSGDSSYGIDESDKDREMETQHDYSRKSSRHRRSGLQDYCDD* 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g5074 765 MobiDBLite consensus disorder prediction 1 35 - -
Mal4g5074 765 MobiDBLite consensus disorder prediction 640 713 - -
Mal4g5074 765 SMART rrm2_1 230 313 IPR003954 GO:0003676
Mal4g5074 765 MobiDBLite consensus disorder prediction 77 113 - -
Mal4g5074 765 MobiDBLite consensus disorder prediction 402 765 - -
Mal4g5074 765 MobiDBLite consensus disorder prediction 18 35 - -
Mal4g5074 765 Gene3D - 216 315 IPR012677 -
Mal4g5074 765 PRINTS U2 auxiliary factor small subunit signature 339 351 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 PRINTS U2 auxiliary factor small subunit signature 274 296 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 PRINTS U2 auxiliary factor small subunit signature 191 210 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 PRINTS U2 auxiliary factor small subunit signature 210 230 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 PRINTS U2 auxiliary factor small subunit signature 246 261 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 PRINTS U2 auxiliary factor small subunit signature 301 325 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 MobiDBLite consensus disorder prediction 563 630 - -
Mal4g5074 765 CDD RRM_U2AFBPL 218 316 - -
Mal4g5074 765 Coils Coil 7 34 - -
Mal4g5074 765 ProSiteProfiles Zinc finger C3H1-type profile. 185 213 IPR000571 GO:0046872
Mal4g5074 765 MobiDBLite consensus disorder prediction 142 170 - -
Mal4g5074 765 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 320 347 IPR000571 GO:0046872
Mal4g5074 765 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 217 317 IPR000504 GO:0003723
Mal4g5074 765 ProSiteProfiles Zinc finger C3H1-type profile. 319 349 IPR000571 GO:0046872
Mal4g5074 765 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 4 648 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mal4g5074 765 MobiDBLite consensus disorder prediction 726 765 - -
Mal4g5074 765 MobiDBLite consensus disorder prediction 94 113 - -
Mal4g5074 765 PANTHER ZINC FINGER CCCH-TYPE, RNA BINDING MOTIF AND SERINE/ARGININE RICH 2 4 648 - -
Mal4g5074 765 SUPERFAMILY RNA-binding domain, RBD 249 317 IPR035979 GO:0003676
Mal4g5074 765 SMART c3hfinal6 319 348 IPR000571 GO:0046872
Mal4g5074 765 SMART c3hfinal6 186 212 IPR000571 GO:0046872
Mal4g5074 765 Coils Coil 72 106 - -
Mal4g5074 765 MobiDBLite consensus disorder prediction 425 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g5074 Mal-Chr4 130999146 131007129 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal4g5074 zf-CCCH 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g5074 K24273 - cam:101495256 853.203