Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g5070 ATGGCGTCTGCTAGCCTTGGAAATGGTGGTGTCGGCAGCAGTTCAAGGTCTGCTGCTCCCTTAAGAGCTGCTTCATCCACTTCCTCTTCTTCTGTCGATTGGCTTGGTAGAGAGATGCTTCATATGAACCTTAATCGTGATCATAACGATGATGACGATGATGATGGCAGAGAGAGTGAGCCCGACATCATTGATGGTGTGGGTGCTGAAACTGGACATGTTATACGAACCAGCATCGCTGCACGAAACGGTCAATCTAAGCAGAATGTTAGTTATATCGCGGAGCACGTAGTTGGGACGGGCTCTTTTGGCACTGTTTTTCAAGCTAAATGTAGAGAAACAGGAGAGATTGTTGCCATCAAAAAGGTTCTCCAGGACAAGCGTTACAAGAATAGAGAGTTACAAATTATGCAAATGCTCGACCATCCAAATATTGTCGCCCTCAGGCATTGCTTCTTTTCCACCACCGACAAAGAAGAGCTTTACTTGAATCTTGTACTTGAATATGTTCCTGAAACCGTCAATCGTATTGCAAGGAACTATAGCAGGATTAACCAACGAATGCCTTTGATATACGTCAAACTTTATACGTACCAGATATGCAGGGCCCTTGCTTACATACATAATTGCATTGGCATCTGTCATCGTGACATCAAACCTCAGAACCTACTTGTGAACCCGCACACCCATCAGCTGAAACTATGTGATTTTGGGAGTGCAAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCATATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCCACTGAATATACAACAGCCATAGATATATGGTCAACTGGTTGTGTAATGGCCGAGTTACTTCTTGGACAGCCCTTGTTTCCTGGAGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGGGAGGAGATTAAGTGCATGAACCCAAATTATACCGAATTTAAGTTTCCGCAGATAAAACCTCATCCATGGCACAAGGTCTTTCAGAAACGTTTGCCCCCAGAAGCAGTTGATCTTGTCTGTAGGTTCTTTCAGTACTCTCCTAATTTGAGATGCACTGCTTTGGAAGCTTGCATTCACCCCTTCTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCCAATGGTCGCCCATTGCCTCCGCTGTTTAATTTTAAACCCCAGGAACTTTCTGGTATTCCACCTGATGTTATCAACAGGCTTATTCCAGAACATGCTCGTAAACAGAACTTATTTATGGCTTTGCACACCTAG 1293 0.4393 MASASLGNGGVGSSSRSAAPLRAASSTSSSSVDWLGREMLHMNLNRDHNDDDDDDGRESEPDIIDGVGAETGHVIRTSIAARNGQSKQNVSYIAEHVVGTGSFGTVFQAKCRETGEIVAIKKVLQDKRYKNRELQIMQMLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRIARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKPQELSGIPPDVINRLIPEHARKQNLFMALHT* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g5070 430 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Mal4g5070 430 CDD STKc_GSK3 87 379 IPR039192 -
Mal4g5070 430 SUPERFAMILY Protein kinase-like (PK-like) 91 403 IPR011009 -
Mal4g5070 430 MobiDBLite consensus disorder prediction 45 67 - -
Mal4g5070 430 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 427 - -
Mal4g5070 430 Gene3D Phosphorylase Kinase; domain 1 77 171 - -
Mal4g5070 430 MobiDBLite consensus disorder prediction 1 31 - -
Mal4g5070 430 SMART serkin_6 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g5070 430 Gene3D Transferase(Phosphotransferase) domain 1 172 420 - -
Mal4g5070 430 Pfam Protein kinase domain 94 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mal4g5070 430 ProSitePatterns Protein kinases ATP-binding region signature. 98 122 IPR017441 GO:0005524
Mal4g5070 430 PANTHER SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED 1 427 - -
Mal4g5070 430 ProSiteProfiles Protein kinase domain profile. 92 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g5070 Mal-Chr4 130907315 130912883 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g5070 98 384 Core Cell Cycle Gene Families AT1G76540 35.452 1.67e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Mal4g5070 Pkinase 1e-64 CL0016