Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g5036 ATGCAACAACAACGTCAATCCAATTCAGCTAAGGTTGTTCAAATTCCGAAACACAATTGGTCGCAACACGTTAATTCTCACAAGAATTTCTCTTCCCAGGCCAATTTTGTGTGCTCCAATTTCCTTTTTTCTCTTCCAAATAACAAACCAATCGACGCGGCCGGTGGTAGCAGGTTTGTAGTCCGACAAGGTCAAAATGTTCAAAGTTCACAAAAAGCACAGGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTAAAGATATCTAGTAGGAATTATGTCCAACCTGGAAAATCTGTTAAAGTCACTGCTCAGTTTCACGAACACAGGACAACAACTTCCTTCCAAGGAAGCTATGAGAATGACAACAAGCTTAATCGTCCCGATATCACCGCAACTCCAACTGTCATTAATCATACTTCTCGGTTCATAGATAGTTCAGTAAACAATCAAACAAAGTACACAAGCCAAACCAACCAGTCTACAAATTGTGTACCTGATAATATTAATGTAGATGACGACGACATACTCGAGAGCATTGATGTTGACCAAATTGTTGAGAAATACCAATCCACTTGCACTCCTCAACCTCCAATGTCCAAGTTTCCTCCTATTACTCCAACGGCAGATAGGGATAATTTTGCCGGACAAGGGGATACTTTTTTGCCACCAGAGCTGTGCTTGGATTGCATCCACGGTTACAAGTTAGGGGTTTGCCCTGAAGCAGCAAGTCATTTGCAGGAATTCAAGGATAATCTTATTGCTGTCTCTAATGAACTGATTGACAATGTTGAAAATCTCAGTTCTGTGCAGATAGCAAAGCTTCGCCAAGACAGGACACAGCTGAATAAGCAAATTCAACAACTTGAAAAATATATATATTCCAGTAACCTTGAAGAAGAAAGACAAAAGTCGCATTTTGCTACATCCATGCCACCACCTACGTCTTTTGTGTATGAAACACCCCAGCGAAATGTCATCAGTAGTGGACCTGTCATCAGTAGTGGACTAAATAGATATGACGACCAGGCTTATATGGATAATGGTACATATGGGACATCATACCAGTCTTCATGCGGCATGCTATCAGGTCCAATAGAGAGGGAACCATTCATTCCAAAGATTATTGAAGTTAATTACATCGAAGGTTCTGGAGATAAAAAGTGGAGCAGCCGGGATTTTTCTTGGACTAGAGAGTTAGAGGTTAATAATAAGAGAGTATTTGGAAATCACTCATTTCGCCCCAATCAAAGAGAGGTCATTAATGCCACGATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACCGGTGGAGGAAAAAGTCTGACCTATCAGCTACCAGCTCTTATTAATCCTGGTATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATAATGCACCTATTGCAGGCAAATATACCTGCTGCTTACTTAAGTGCCAATTTGGAATGGGCTGAACAGCAGGAGATCCTTAGAGAACTTAATTCGGATTATTGTAAATACAAGTTGTTATATGTGACACCCGAAAAGGTTGCCAGAAGTGACGTTCTTCTGCGACACTTGGAGAGTTTACACGTTCGTGAGTTGCTTTCAAGGATTGTAATTGATGAGGCTCACTGTGTGAGCCAATGGGGACATGATTTTAGACCAGATTATCAGGGACTTGGTGTATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACAGCAACAGCTAGTGTAAAAGAAGATGTTGTGCAAGCACTCGGTCTTGTTAACTGCGTTGTTTTCCGGCAAAGTTTTAATCGCCCGAATTTATGGTATTCCGTTGTCCCCAAGACCAAAAAGTGTGTGGAGGATATTGATAAATTTATAAGGGAAAATCATTTTGATGAATGCGGCATCATCTATTGTCTTTCACGAATGGACTGTGAAAAGGTGGCTGAGAAATTGCAGGAATGTGGGCATAAATGCGCATTTTATCATGGGAGCATGGATCCTGATCAACGTGCTTATGTTCAAAGGCAATGGAGCAAAGATGAGATCAATATAATTTGTGCTACCGTGGCATTTGGAATGGGGATTAACAAACCTGATGTCCGCTTTGTAATCCATCATTCCCTCCCAAAATCTGTTGAAGGTTATCACCAGGAATGTGGACGAGCTGGTAGAGATGGTCAGCGTTCATCCTGTGTGTTATACTATAGCTACAGTGACTATATTCGAGTTAAGCATATGTTAAGCGTTGGAGCAGTAGAGCAAAGTCCCATGACATCTGGATACAGTCGTTTTAATGCGGCAAATTCAGGAAGGTTACTGGAAACAAACACTGAAAACCTTTTGCGCATGGTCAGTTATTGTGAAAATGATGTTGATTGTCGGCGCCTTATTCAGCTCGTTCATTTTGGGGAGAAGTTTGATTCTTCAACCTGTCAGAAAACATGTGATAACTGTGTGAAGGTCACAAGTTTCGTTGAGAAGGATGTCACCGAAATTGCAAAACAATTGGTTGAACTAGTTAAGCTAACGGGACAGAAGGTCTCAGCATCTCACATATTAGAGGTGTATCGTGGTTCCTTAAGCCAGATGGTCAAGAAACACCGGCATGAGACTGTGCGTCTTCATGGTGCTGGGAAGCATCTGGCCAAGGGTGAGGCTTCCCGTATATTGCATCATCTTGTTGTTGAGGACTTTCTTGCAGAGGTGGTAAAGAAAAGTGATTTTTATGGATCAGTATCATCAGTGTTGAAGGTAAATGAGCAGAAGGTCTGTAATGTGTTGTTTGGTGGGCAAAGAATTATATTGAGATTCCCGTCTTCTTTGAAAGCATCAAAGCCTGGGAAATGTGATTCAATTCCAGCCAAAGGTTCTCTGACATCTGGGAAGCTGAATCTTCCCATTGACATTCCTGACCAACCTGAAACTGAAATAGACTTGAATCTAGCAGCTATGTTGTACCCTGCTCTGCGGTTGTTGCGGACAACTCTTTGTAGAGAAGCTGGAGAGGGTGTTATGGCTCACCACATATTTGGCAATGCTACGTTGCATGAGATAAGCAAGAAATTACCGAGAACAAAGGAAGAACTTCTTGATATCAATGGCATTAGCAAGACTAAAGTAAGCAAGTATGGGGATCGGTTACTGGAAACCATTGAGAAAACTATAAATGAATACTACTGTACGGATAAAAACAGCAAAGGCAGTGCTGATTCAGCCAAAAGAAGACGAGAGGCAAATAGAGACCCAGATTCAAATGGTGAGGATGATGATGCCTTAATCAAAAGTACCGGTCGCTCCAAGAAAAGAACGGTAAAGAGACAAATCAAGAAGGCTGAGATATATGATTCAGAAGAGGAAGATTATTACCATGGATGCCTCGACGAGGACCTAGACTGTGTTGACATTGAAAACATCATATTAGATAAAGTAACTGGTACAAATTCTGCAGGAAGAGTACTACCTCAATGGACAGCATCATGA 3480 0.4126 MQQQRQSNSAKVVQIPKHNWSQHVNSHKNFSSQANFVCSNFLFSLPNNKPIDAAGGSRFVVRQGQNVQSSQKAQVEKAWLALSSLKISSRNYVQPGKSVKVTAQFHEHRTTTSFQGSYENDNKLNRPDITATPTVINHTSRFIDSSVNNQTKYTSQTNQSTNCVPDNINVDDDDILESIDVDQIVEKYQSTCTPQPPMSKFPPITPTADRDNFAGQGDTFLPPELCLDCIHGYKLGVCPEAASHLQEFKDNLIAVSNELIDNVENLSSVQIAKLRQDRTQLNKQIQQLEKYIYSSNLEEERQKSHFATSMPPPTSFVYETPQRNVISSGPVISSGLNRYDDQAYMDNGTYGTSYQSSCGMLSGPIEREPFIPKIIEVNYIEGSGDKKWSSRDFSWTRELEVNNKRVFGNHSFRPNQREVINATMSGCDVFVLMPTGGGKSLTYQLPALINPGITLVISPLVSLIQDQIMHLLQANIPAAYLSANLEWAEQQEILRELNSDYCKYKLLYVTPEKVARSDVLLRHLESLHVRELLSRIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNTPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCVEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLQECGHKCAFYHGSMDPDQRAYVQRQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSVEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMLSVGAVEQSPMTSGYSRFNAANSGRLLETNTENLLRMVSYCENDVDCRRLIQLVHFGEKFDSSTCQKTCDNCVKVTSFVEKDVTEIAKQLVELVKLTGQKVSASHILEVYRGSLSQMVKKHRHETVRLHGAGKHLAKGEASRILHHLVVEDFLAEVVKKSDFYGSVSSVLKVNEQKVCNVLFGGQRIILRFPSSLKASKPGKCDSIPAKGSLTSGKLNLPIDIPDQPETEIDLNLAAMLYPALRLLRTTLCREAGEGVMAHHIFGNATLHEISKKLPRTKEELLDINGISKTKVSKYGDRLLETIEKTINEYYCTDKNSKGSADSAKRRREANRDPDSNGEDDDALIKSTGRSKKRTVKRQIKKAEIYDSEEEDYYHGCLDEDLDCVDIENIILDKVTGTNSAGRVLPQWTAS* 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g5036 1159 MobiDBLite consensus disorder prediction 1065 1098 - -
Mal4g5036 1159 SMART ultradead3 408 611 IPR014001 -
Mal4g5036 1159 Coils Coil 271 291 - -
Mal4g5036 1159 Pfam HRDC domain 984 1051 IPR002121 GO:0003676
Mal4g5036 1159 CDD DEXHc_RecQ 403 602 - -
Mal4g5036 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 869 IPR027417 -
Mal4g5036 1159 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 4A 99 1128 - -
Mal4g5036 1159 Gene3D - 376 602 IPR027417 -
Mal4g5036 1159 ProSiteProfiles HRDC domain profile. 979 1061 IPR002121 GO:0003676
Mal4g5036 1159 MobiDBLite consensus disorder prediction 1067 1097 - -
Mal4g5036 1159 PANTHER DNA HELICASE RECQ FAMILY MEMBER 99 1128 - -
Mal4g5036 1159 Gene3D - 826 936 IPR036388 -
Mal4g5036 1159 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 620 781 IPR001650 -
Mal4g5036 1159 Gene3D HRDC domain 978 1067 IPR044876 -
Mal4g5036 1159 Gene3D - 603 822 IPR027417 -
Mal4g5036 1159 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 387 744 IPR027417 -
Mal4g5036 1159 SMART RQC_2 828 939 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mal4g5036 1159 Pfam DEAD/DEAH box helicase 414 582 IPR011545 GO:0003676|GO:0005524
Mal4g5036 1159 CDD SF2_C_RecQ 603 735 - -
Mal4g5036 1159 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 420 595 IPR014001 -
Mal4g5036 1159 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 534 543 IPR002464 -
Mal4g5036 1159 SMART helicmild6 645 726 IPR001650 -
Mal4g5036 1159 ProSiteProfiles Rhodanese domain profile. 635 677 IPR001763 -
Mal4g5036 1159 Pfam RecQ zinc-binding 737 818 IPR032284 -
Mal4g5036 1159 Pfam RQC domain 825 940 IPR018982 GO:0006260|GO:0006281|GO:0043138
Mal4g5036 1159 SMART hrdc7 979 1061 IPR002121 GO:0003676
Mal4g5036 1159 SUPERFAMILY HRDC-like 984 1055 IPR010997 GO:0000166|GO:0044237
Mal4g5036 1159 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 404 879 IPR004589 GO:0004386|GO:0006310
Mal4g5036 1159 Pfam Helicase conserved C-terminal domain 620 725 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g5036 Mal-Chr4 130415283 130426809 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g5036 635 739 Eukaryotic Initiation Factors Gene Family AT1G72730 24.762 1.10e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g5036 K10901 - gmx:100800006 1751.1