Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal4g4996 ATGGATGAAGGAAAACATAAATCGCGGAAAGAAGATGGTGATTCTAAGAGGAATCACCGTAGTAGTGATCGAGATCGTAACGATCGAAGCGATGGTAGGCACAAGGAGAAGAGGGATCGTGAATCTCGAAGGCATGACAGAGAGAAAAGTACTGATTCTGAGGATAAGCATGATAGAGACAGGGAGAAGAGGAGGGAGAGTAAAGAGAAGGATAGGGCACGGGTTCATGATGTCGAAAGAGAAAAACAGAGGGAGAGGAAGAGGGAAAGAGATAGGGAGGAGAAGGAAAAGGAGAGAGTGAGGGAGAAAGAAAGAGAGAGGGAAGAGAAAGAAAGGGAGAGAGTGAGGGAGAAAGAAAGAGAGAGGGAGAGAAAGGAGGAGAAGGAGAGGATTAGAGAGAAAGAAAGATTAAGGGAGAGGGAAAGAAGGGAGCACGAGAGAGAGAAGGAAAAGGAAAGGGAAAAGGAGAGAGACAGAGGGAGGAGAGGACGCGAGAGGGAGAAGCATAGGGATGTTGATAGTGAAAACAGTGATGGTGAGTTGAGGGAGAGGAATCGGAAGCGGCATAAGAAAGAGGATGATGGTTACAAGGGGCGAGAGAAGGAAAAGAGTTCTAGTAAGTCAAGTAGGAAAACTGAGGGAGTTGATGGGAGCCCGAGGAGAAAGAGTGATGGAGATGATTCAGATTCTAAAGACAAAGTGAAAAAACCGACTCGTGAGGAGGAAATGGAAGAGGAACAAAAGAGGTTGGATGATGAAATGGAAAAGAGGAGGAGGAAAGTTCAAGCATGGCAAGAGTTAAGGAGGATGGAGGAAGAGTCACAAAGAAAAAAGCAAGGTGAAGCAAGTGTTGCTGAACCTGAGTCTGGAAAAAAATGGACACTTGATGGGGAAGAATCCGATGATGAAGATGGAACTGGTAGACATACGAGTATGGATGTAGACGAAGACGATAGACTTGCTGATAATGAAACTACTGAGTCAATGGTGGTAGATGTTGACAATGGAACAGTTGCGTCCGACTTACAGAATGGAGATGCTGGTGCTCCTGCAGAGGATGAGATAGACCCATTGGATGCTTTCATGAATTCCATGGTTCTTCCTGAGGTTGAAAAGCTTAACAATGCTGTTAACTCAACACCTTCTGATAAAGCTTCTGACTTGAAACCCAAAGAAAAAGGGGCCGGGAGTAGTAATGGTGGACAATCAAGGAAAGGTTCAAATAAATCTATTGGCAGGATAATTCCTGGTGAAGAGTCCGATTCAGATTATGCAGATCCGGAAGTTGAGGGTGATCCATTAGATGAAGATGACGACGAGTTCATGAAAAGAGTGAAGAAAACAAAAGCTGAAAAGCTTTCTATAGTTGACCACTCAAAGATTGACTATATACCATTCAGAAAGAATTTCTATATTGAAGTGAAGGAGGTTTCAAAGATGACTGTTGAAGAAGTTGCATTTTACAGGAAGCAGTTAGAGTTGAAGATACATGGAAAGGATGTGCCCAAGCCTGTAAAGTCATGGAACCAAACTGGACTTACTAGCAAAATTTTAGACACAATAAAGAAGGCGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCGTTGCCTGTAATTATGAGTGGCCGAGATTGCATAGGCGTTGCCAAAACCGGGTCAGGTAAAACACTTGCTTTTGTTCTTCCAATGTTGAGGCATATCAAGGATCAGCCACCAGTTGTTGCAGGAGATGGACCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTCACAAAGGTAATGGGTATCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTTGTTTGTACTCCAGGTAGGATGATTGACATACTGTGCACCAGCAGTGGAAAAATAACCAACCTGCGTAGAGTAACTTTTCTGGTCATGGATGAGGCAGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACAAGAATTGTTCAGAATATTCGGCCAGATCGTCAAACAGTTCTCTTCTCTGCCACTTTCCCGCGCCAGGTTGAAATTTTGGCTCGCAAGGTTTTAAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGTTAGTTGAGGTGAGGCCGGAAAATGAGAGGTTCCTTCGACTCTTGGAACTACTTGGAGAATGGTATGAAAAAGGAAAGATTTTGGTATTTGTCCACTCACAGGATAAATGTGATTCATTGTTCAAGGATCTAATGAAACATGGTTATCCATGTCTTTCTCTTCATGGAGCCAAGGATCAGACAGACCGTGAATCCACAATATCTGATTTTAAAAGCAATGTCTGCAATTTGCTGGTTGCAACAAGTATTGCTGCCAGGGGATTAGACGTCAAGGAGCTTGAATTGGTGATCAATTTTGATGTTCCAAACCACTATGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGTGCTGGCCGAAAGGGTTGTGCCATCACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAGGCTTTGGAGCTATCTGAGCAGATTGTTCCCGATGATCTGAAATCCCTTGCCGATGGCTTTATGGCAAAAGTGACTCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAGAGCAGCAAAGAAAGCCCAAGCCAAAGAATATGGATTTGAAGATGACAGGTCAGATTCTGAAGATGAAGACGAAACTATTAGGAAGGCAGGAGGTGATATCTCCCAGCACCCTGCTTTTGCTCAGATTATAGCAAGTGGTCCTCCAATACCTAATCCGATCTTTGGAGGCAAACTGATTTCAAATGGTGCGCCAACTGTTTCTTCGGCAAATGGAACAACAGCTTTGACTGGGGTAACTCAAGCAGCATTAGCTGCTATAAACCTGCAGCACAACTTGGCAAAAATACAATCTGAAGCATTACCAGAGCATTATGTGGCTGAGTTGGAAATAAATGATTTCCCTCAGAATGCCCGCTGGAAAGTCACACACAAGGAAACTTTGGGCCCCATTTCTGAGTGGACTGGAGCTGCTATCACTACAAGGGGGCAGTTTTACCCACCTGGCAAAGTTGCAGGACCTGGGGGGGATCGCAAACTCCACTTGTTCATTGAGGGTCCTAGTGAACAGTCTGTTAAGAGAGCCAAAACAGAATTGAAACGAGTTTTGGAAGACATCACCAATCAGGCTTTGCAACTACCTGGTGGACCTCAACCTGGCAAATACTCTGTTGTATAA 3381 0.4395 MDEGKHKSRKEDGDSKRNHRSSDRDRNDRSDGRHKEKRDRESRRHDREKSTDSEDKHDRDREKRRESKEKDRARVHDVEREKQRERKRERDREEKEKERVREKEREREEKERERVREKERERERKEEKERIREKERLRERERREHEREKEKEREKERDRGRRGREREKHRDVDSENSDGELRERNRKRHKKEDDGYKGREKEKSSSKSSRKTEGVDGSPRRKSDGDDSDSKDKVKKPTREEEMEEEQKRLDDEMEKRRRKVQAWQELRRMEEESQRKKQGEASVAEPESGKKWTLDGEESDDEDGTGRHTSMDVDEDDRLADNETTESMVVDVDNGTVASDLQNGDAGAPAEDEIDPLDAFMNSMVLPEVEKLNNAVNSTPSDKASDLKPKEKGAGSSNGGQSRKGSNKSIGRIIPGEESDSDYADPEVEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYIPFRKNFYIEVKEVSKMTVEEVAFYRKQLELKIHGKDVPKPVKSWNQTGLTSKILDTIKKANFEKPMPIQAQALPVIMSGRDCIGVAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVMGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLELLGEWYEKGKILVFVHSQDKCDSLFKDLMKHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSIAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKSLADGFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEDDRSDSEDEDETIRKAGGDISQHPAFAQIIASGPPIPNPIFGGKLISNGAPTVSSANGTTALTGVTQAALAAINLQHNLAKIQSEALPEHYVAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQFYPPGKVAGPGGDRKLHLFIEGPSEQSVKRAKTELKRVLEDITNQALQLPGGPQPGKYSVV* 1127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal4g4996 1126 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 506 534 IPR014014 GO:0003724
Mal4g4996 1126 MobiDBLite consensus disorder prediction 922 936 - -
Mal4g4996 1126 CDD DEADc_DDX46 495 716 - -
Mal4g4996 1126 Coils Coil 240 263 - -
Mal4g4996 1126 MobiDBLite consensus disorder prediction 421 437 - -
Mal4g4996 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 743 887 IPR001650 -
Mal4g4996 1126 SMART helicmild6 767 848 IPR001650 -
Mal4g4996 1126 MobiDBLite consensus disorder prediction 1 316 - -
Mal4g4996 1126 MobiDBLite consensus disorder prediction 1 439 - -
Mal4g4996 1126 Gene3D - 459 715 IPR027417 -
Mal4g4996 1126 MobiDBLite consensus disorder prediction 328 342 - -
Mal4g4996 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 578 864 IPR027417 -
Mal4g4996 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 537 715 IPR014001 -
Mal4g4996 1126 Coils Coil 68 158 - -
Mal4g4996 1126 MobiDBLite consensus disorder prediction 922 947 - -
Mal4g4996 1126 CDD SF2_C_DEAD 727 857 - -
Mal4g4996 1126 Pfam DEAD/DEAH box helicase 531 702 IPR011545 GO:0003676|GO:0005524
Mal4g4996 1126 Gene3D - 716 890 IPR027417 -
Mal4g4996 1126 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 182 952 - -
Mal4g4996 1126 SMART ultradead3 525 730 IPR014001 -
Mal4g4996 1126 Pfam Helicase conserved C-terminal domain 740 848 IPR001650 -
Mal4g4996 1126 PANTHER LOW QUALITY PROTEIN: DEAD-BOX ATP-DEPENDENT RNA HELICASE 42-LIKE 182 952 - -
Mal4g4996 1126 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 661 669 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal4g4996 Mal-Chr4 129849720 129853100 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal4g4996 493 868 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 7.53e-59 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal4g4996 K12811 - gmx:100784306 1533.08